AMCG00009948


Basic Information

Item Value
gene id AMCG00009948
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6700420 ~ 6724635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009948
ATGGAGCGCATGGTTGATCTGCTGGAGATCTACCAGGCAGAAGATGAGGCCTATGGGTCGCTGGTGGAGGCCACCACTGAGCTGTACCAATACCTGCTGCAGCCCTTCAGAGACATGAGGGAACTGGCGATGCTGAGGAGGCAGCAGATAAAGATCTCCATGGAGAATGATTACCTCGGGCCTAGGAGGATTGAGAGCCTGAAGAAGGAGGATTCTGATTGGCAGAGAAAGGCACACATGGCAGTGCTCTCCATACAGGACTTCACCGTAAAGTACTTTGAAATCACGGCCCGAGCACAGAAAGCGCTGTTCGACCGCATGCGTGTCGACCAGAAGAAGTTCGGCAAGGCGGCGTGGGCGGTGGCGGTGCAGCGAATGGAGAAGTTGCAGTATGCTGTGTCCAAGGAAACGCTTCAGCTGATGAGGGCGAAGGAAATCTGCCTGGAGCAGAAGAAACACGCGCTGAGGGAAGAGATGCAGAGCCTGCAGGGGGGCGAGGAAGCCATGGCCCGGCTGGACCAGCTGGAGGGAGAGTACTACgaactgcagctgcagctttaCGAAATCCAGTTTGAGATCCTGAAGTGTgaggagctgctgctgacgGCACAGCTAGAGAGCATCAAGAGACAAATGATCGaGCGGCAGGATGAGGTGGTGTATTACGACACATACGAGAGTATGGATGCCATGCTGGCCACCGAGGACATGGCCGGCTCTGTCCATCCCCAGAAAGAGGATTTTCTCAAACTGCAGCAGAGGATTCGGCAACTGGAGGCCAGAAGGGGGCGAATATCTGCCAAGAAAGCCTACCTCAGGAACAAGAAGAAGGAAGAGCAGCTGCAGCTGGAAGAGGAGCGAAAGAGCACTTGGGTCAGTCAGGAACGACAGAAAACACTGGACCGACTGCGGAGTTTCAAACAGCGGCACCCTGGCCAGGTAATCCTGAAGTCCACCAGACTGCGGCTGGCTTACACCAGGAGGAAAAGCACCAGCACATGGTCTCCAAGTGGTGGCTCGTCCCAGCCGCAGTCTCTGGCTGCCAGCGTGCAGACTGAGGAGAGCCGGCTGCCTGGGGTCTCCGCCCTCTCAGAACAGCCACTGGCAGTGCCACCTGGCCAGACGGAACCTGTTTCGTTACCTCCAGGGGGCACCGCCTTCCCACCCACCTCAGCTGCTTCTCCCCCACTATCCCTACCTACAGAAAGAGATCTCTTTGCACTTACagccccaccaccacctcccccgccccctccacctcccccgccccctcccctGCCCAGCGAGGAGCTCCAGTCCGATGGCGAGGCCCAGGATGGAAGCCCTGATCGGCAGCCCAGAGTGGAGCTGAAAGATGGCGCTAAAGGTCCCGGCGCCCCCCAGTTCTTCGACAGCAGCCAGCTGGTGAGCGCCAGGATGAAGCTGAAGAAGACGGCGGCTATGGAGGCTTCACAGAGGCGCAGAGTGAGCTCCCCGATGGACGAGGTGCTGGCCTCCCTGAAACGCGGCAGCTTCCACCTGCGCAAAGTGGAGCAGCGGGCCCTGCCGCCTTCCCCGGACGAGGACGACAGCAACAACATCCTGGCGCAGATCCGCAAGGGCGTCAAGCTGAAGAAGGTGCAGCGGCAGGAGATGCGGGATTCCCTGGGGGAGCTGCCCGACTCCACCGACCCGCTGACCCGCAGCATCCACGAGGCACTGCGGCGGATCAAGGAGGCCTCGCCCGAGTCCGAGTCTGAGGACGAGGGGCTGCCCTGCGCTGACTGGGAGAGCTAGGCCACCCGGCTCCCCTGTCCGATCTCGCCACAGACCCACACCCACTCCCAGATAAAAGGCCCCGTCACCGAGACTGAACTTCTGCTTCAGATTCAAGCTTCGTTACTGTTTACTTTTtctgagttttttgttttttattttattattcctgTGACGAAATTATTTTTCCCCGAAGCCCAACTTTTATAACGCCTCCTATCCGTTCAGGTTCACGTCCCGATCAGACAGGCCGTAACCCTTTTCACCGTGTTCTGGTCACGCGTGTGTTCTGTATGTACTTTGCTACGTTTGATTTACACCGAAGACGATTCTAATCAGGGATATGATGTTTCTCTAGAGGTCTATCTGAGCATGTGGAGCTCTGCTGTTGGCCAGTGGCACTGTGGGGGTGGGTCAGAAGCACAAGCAAGGTTAGCACAATTAGAAACTGGCTCAGGTGCACATTATAAGACGCCATGCCTGACTTCCCCACCTCTCGCTGTCTTGATTTGTTAGCGGCTTAGCGCCACTTCTAACCCCTTGCGCTTTCATCAACGATCAGATTTTGAATGTCTGTTCAGGACTTTCTTCTTCTCGAAGTACCcaaagctttttttgtgtgtttttgtttcattttgttttgtgtagaaaaaacaccatattttaaaagctttgctCTGAATGACAGTAAAGTAAGAATGAAGCGTCGATCTGTGTGGTGAAAAGAAGTTGGGTTTTccatatattgtattcacttttttttacgtgtcttttttcattcacttttctctctttaattttgttgttgtacctAAGGTAAAGAGGAGGTTGAAGCAGTTGGGTTTGCTCCTTTAAACACCTCCTGAAATCCAGTCCTGCTTAAAATACATGacgagtttgtttgtttgtaccaGAAGCAACCTGCAGTACAGATCGCGATGATATAGATCGAAGGGCAACTGCATGCATCAGAAGAGTGCTGTTTCTAGGCCTGGCTTTCTATTCTCTTCAGCTTATAAATAAGGTATTTTGTTAAGAAATGCAGGGTCTTGTATAATAAGTAATAGGCTCTGTGTAAATGCAGGTAATAGCATCTGCAATAGGGAATAGACCAACTTTGACATACTTTCCATGTGGattttattgatctttttatttattttttattgcatggGTACAATCACAGACCAAGGCTGTTTGCCCGAGCATGCCCTTCCAATCAGTTTAGACGTTATGGCGTCTGCTGTACGGGGCCTGGGGCCTGGGACCTGACCTCTATTGCAAAGGAATAACCTCTTCCCATTGCAGAAATACTCATAAGCCCTTGGAAGTTGTTCACTGTGCTATGAATGGATCTAAGATGGACTTCACTGTCGCTGAATCCTAACCTGGCTTTCCGTTTCATTGCCCCTGATTTAGGATTAAATCGCGCTGCCTCACGGCACCCAGGATGGCTGTGTCTGTAAACTCTCCTTGAAAAACAAGGCTGGATTGATTTTGATCAACACTGCAAATTGGCTCAAATGCTGCAGCTGCCGGGGCTGAATCACCCTTTCACTCCTGCCCTGCGCTGTGGAGACCGAGCCGCTTGCTGGAATCGATATCCTTCATGAAACCTGCGGAGGTTACCGGCACGTGTTCTCTGACTATGGAGGGAAATCTGGTCAAGTTTGATAACATTACAGTATAATGTACAGAATGGCTTTAATAAGGTGATCCACTTTGCACTTTGGTTCATTCTGTTTAATCTTCTTTCCTCCTGTAGAAAGAGAGTATGCTCCTCATCACTTTCTGCTCAATATCATTccattaatcaatttaatttgatccctatatattgatttgtgtttctATATGTGGTTTTGGAAGCAgactaaaacatattaaattcaGAGTTACCAATATATTCTGTTTTGCAGTGCACTCTAGGTACCTCTCAGATGCATTGTAGGATGCACCTGTTCATTGAAAGAGCCTGTCTTTTCATTTATGTACCATAGAAACAAAGGGTCCTAATGAAGGAAtatggttgtttgttttaattgtatcttGTTTGGCATTCCACAGCTGCCGAGCGTGACATGCATGTGTGAGATGCCATCAGTGGCTCTTCAGTCTGCTGCCATTCAATTATCCATTCCAGTGCCGAGTGCacagtacttttaaaatattcacactGCTTTCCTGGGTGTTTGGATCCCATAGCTCCTTTAAATGAGGATTATTGTTAATTCTGTGGTTGTTACGTGTGTGACTTGGGACTTGGACTGGCCCTGTGGCAGGTTGGTCTGTCCTTTTTACAGCATGTGAAAAACGAGGTTAGGAACCAAAGTTTATTCGGCTACAGAGAGAGCTTGCCTGGTGTCTTCTCAGTAGTTTCCTTTTGGTTATTCCcctgaatgtaaaaaaagaaaagagttaCAAAAGAGAGGCGTGTTTATGTATGCGGTCTTAAGAGTGTAATACAATACTTGCTTATTGTATTTCACTAGTTCTGTACAGGTTTTACAGTCTGGCTTGTCATGAGTCAGACGCTTGTCTTGAGCATGCTGGGAACTGGAAAGGGTGTAAACTGACCTGGCTGAGGGGCAGGCCGCTGAAATGAATTGGTTGGTGCGTCTGTAGCACTGGGGCCACAGCCAGCCCTTCAAGGACAACACGGGTGGAATCGATCCTGTGAAACATACTGAAGAGCCTCTGATCTTCAGGCCAGAGGCTGCTGTTTTTcctgtagtatactgtagtatacggTTAGCCCTTGGGACTGTGTTAGTGAAGCTGCCTTaaagtgggggtgggggtaatGACAAAGActggctttttgtttgtttgttttgaagcgATCAGCTTCTCAGTGCTATTCATTATTTAAGAAATTCTTCGAGAGTGATTTTGTaacttgtcttttttgtttatgGATTAGTCTTGATTATTCAGGGCTGTACGCAGTCAGGGCCAGCTGCCTGTTCTTGTGTGGAGCAGCTCAAACGTGACAGCTGCTGCACTGGACAAAGAACAGACCCAGAGACGGCCCCTTCAGACCAGCACTGTACGAACAAACCTCACTGTTTCAGTTCTGGGGTCCTCAAACCCTTTGACTTGCAACATCGACCAAGTTAGGCCACAGCCTTTTTGTGCCGAAATGTCTGCAGCTGCAATGCGCTGTACAGCAAAGCAGGGCCACTCTCAGAGCAGGTCAAGATTCACAACTGATTTTGTCTGCCTTAGAACTTGTGTTCAGGTGTGCTCAGTAGCATCCTGGGATATGCTTAAAATTTCTTTATGTGCccattgtttatgtatatgtataggtACATAATACTTTTTTACAGTTACATGCAAGTGACAGAAATGAGTGGATGAACAAACAATTTGCTTTCCCACATCATTTCCTCTTTTGTTCCCACAGTAGTTTCCctgttttgcatgtatttatctCATTCATCAGACAGTCCCTTTCCATGCTTTTGAAGGCGGGAGGCGTGATCTGAGCTAGAATACCCTGACAATGGCATTATCTTCATCAGCTGCTCAGTGctcattttctttgttcaacCTGAGAATTGAGGGTTAGAGGTTAAAATTATTACATAACCGGGAAGCAGAAAGTGGCCTGTTTTTTGGCAGATGCCCATCTGATAATCAAGCACACGTAGGCACAGCTGACATCCCCTCAGCACAGTCGAGCAGCCAGATGCTGTTTAACACTGCTCTCTCCCGGCCGGTCTGGCCGCTGGCGGTTTGATCCGGAGGAGAGGCAGGGCCCTCTAAAGGCCGTTTCTCTGGGGCCTGTTTGCCAAAGCTCCTCATCTCCCTCCGTTCTGCGTCTGATGACGttctttttaaaagacaaaagcgCTTGGTCCGGACATCTTGCTTCCCTCTGTATCTGTGCTTTTCTCTGCTTCCAAAAGTAGGATAGAAATACAGGCTACTGAAGGCCATCCCAGCAATCTGTAGTGAGAACCAGAgaaaacctgcagaccctgtTTGGTTTAGTTTCCATGTCGGTGTCTGTGATTCGGGTAGTGTGGGTTTGGTGTCAGGGCCAGCATGCTTGGAAACGATTAATCAAAAGCTGCAGGGAATTACCCCCTCTGTAAAACAGTAAGGCAGATGGGTATATTTTGAACCCGGCTAATCCTCACTGGAGACCGCTTTACCAAGCCGCTGCAGCGCAAATTAATCTTGTGATGTAATCTTTTGGAGGACCCCCCTGATTACgttcttaaaaatatacaggCTATCtgatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgaataaatacaactatGGAGAACTCACCCTTGCAGATGCCatagtagtttttgtttttttaagtaagctTTAAGATACCCTTCTACTTGGGCCAATGTCATCAGCCACTTTTTCTACTAGCAGAGTAAAGCCAGGGGCCACTGTCTCTAGTGTCCCTTCAGGAGCGCTTGAATTCTGTAGTCAATTCAATAATGGTGATTTGGTTGTCTTATGATAGGCCATTTCTCATTAAAACCCAGTGTGGTGAAATACTGTTCCTCCCCACACATTTAGCAGtacattatgtttttgttttgataataataataataatatcatagcATAACATCTTAATGAGATTGAATGGGGAATACAAGAGTCTGAGAGGCCCATCTTTCTCTGTATTAGTTTGATGTGCTGTCTTCAGTTCCACAGCCTGGTGTTGACATCTGATGACCTGCAGGTACCAGGCCAGGGAAGCAGGGGTTTGAATTGCAGCTCTTTTCTTTAGTGTAGTGAGGATAGCAATATTTATTAACCaagtatgtttttctttgtttagtgTGTTGATTTCACAGATATAGAATATTTTgctgtgttgatttattttttttaatcatttttatttgtgatttcatGATTTTCACCTTTTTTCTGTGTCATAATTTAAAACGTAGAGGCACTGCATCTGTTGTGTTGGGATAATGTCTGTGTGTCGGTTGGTATTATGACGTGACTGATCTGGGCCCCAGCAGGCCGTGGCGGGTCACTTCAATTCTGAACCGCCTCTTTGACCCGGCATTACAAAGGAAAAGCAGAAGCAGCTTCCACTGGGTAAGCagaacagatgtttgttttgcaatccTGCGTCCGTGCAGACAGGCTGCTGTAACCGGCCTGGGGTCTCTCCAGTGCGGGTGTCCTCTCTCTGCGAAGGCACATCTGTCTGGAGAGGCAGCGGTGGGCCGACCACAGAAGGAGTCCATTTGTGGTTTAGTGGCTAATGACATCACAATGCCCCAGTTATTTTAACGTCACGGATATTAATAATTCAGCAGGCGTTTGAGAGAAGCGGTGAAGAGCACCCGACTGGTGCGTGGGCAGCTCTCTCTCGCGAGGCCAGCGGGGGGGGCTGCTACGGAGACTGTATTAGCTCTTATTTTTAGCTGCCTGTTTTTTCATTCGTAATGCAGTTTGATGTTTTTCCATTAGCCGTTGTGTGGGCTGGGAGTGAGGAGAAGGGCTGCCTTTATCAGAGACTGCATCCCCCTGTTTCCAGCTCTTAACAAACTTCTCTCAGTGCTGCAGTATTCGTGTTGCTTTgagtttattttagaaaaaacacCATTCACAGCTGTTATTCTACAGTTAACTGATGAGAATTCACTCAGTTGTGAATTTGTCTCTATTTTCCGTGTCATCCACAGCCATAATTCTGCAGTATTGTTCCAAGCaggtatttatacatttatatgtgtgtgtcaatataatatataatctaaaATTAGGATTTTGAAGTTATGGGATCAAATGCACTGGCCATTTAAGTTCATTGTTTTAAACTGCATTCCTAAACCTTGTCCTGTACCTGCCTTGCTTTAAAAGTGAAGAAAGTCCATTTAATGAAAGCTCTGCAGAGTTCCTGTCCGTCTGACTCTGGATAAACCGAACGCCAGCTGTGCTGACAATGGGGCATAGTCTTCACTGTCATTCGCTTCATTATGGGCAATAGCAATTGAATGCCCGTCACACTGGGCACAGAGTACGCCTGTGTCCTGCACAGGCCGTGTCACCCAGGACTCTTAGCTCGAGCTGGTGTGCTGTGAGCTCAGCGCAGGTGTGTGCAGCTGTGCACCGGCCTGTTTTTATCATTGTGTGATGAAACTCAATGGGATTGGCTTCCAGTGTAACTATGCAGGGCTTCTGCTCGATGCGCGTGGTGAGAAAGTCACCCATTCTCTGCAGTGCTGCTACAGAGCTTGGCTTGATGCAGCGTGTCACAGTATTTGAAGGGAGTGGCTGCGGGAGTGTGGAAGTGAACTCTGCTGCCGAAGGAGTCCGTTTCCCTCACCGGTGTTATCTTCAAAGCCAGTTGCCTGTGGCTGCATCCCTGTGTCCGAGCGCCATCCAGCGCCCCGGCCTGCGGCGTGTGGTGACCCGAACCCCTGTAAACCCTCATGGTCATCCTCTTCAGTGTCGCGGCTCCATCCAGGCGGGCTGATTTCGGCCAGCTCAGCGTATTTCCCCCTTTTCCTTCAGTTTGACAAACAGaatcatgttgttgttgttttgtttttggttgttgttgtttgttgtttttatcccatagtttgtctgtgtgttttggaatTTGGTTTGAATATTATCTTACTTTCTGAAATATAACAAGTTATTACTATGAAGTGTGAAGTTAAAGTTGCACTGACTATAGCAAGAAGTGTAATGAAGTGTGAGGAAAAGCAGATGTAACGTTTACTGCTGTTATGAATTGACATTTAGTGACCTTGTTTGGCCAGttcggggaaaaaaaaaagattgtttgccacatttaagtttgtttttgttgtttgttttttacagtaatgACAAGTGCATATTACGGTATACAATAACAGCAGTGTATGCATGCACATACGGACTGGCAGTGTTTTTGCTGATTGCTGATTACAGCATGTTGAAGTTAGATTAACAAGTAATGAAACTGAATAATGTCACTTATTGCACAATGTTCTTCCATGGTACAGCGTAGCACAGTTGTTGACCTCTCTTCAGTACTAATTTACatctatatactgtatatcctACCGTGGAAAGTCTCgttgattgatttataaacaTGTACTGTAGTTAGGTTTATTTAAACTCCTTTcctcatttctgttttaaaacccTGTTCAGTGTGTAACCTTTATATGtctttttttgtctgtattttgttctttgttcttttgttcatttctttctctgttCTTTTTGGCCAACACTACAGAATATTACCTGAACCATTTAATTGTGTGACCTTAAATATCTGGCTTACCTGGGCACATCCTGATCAACCTCATTAGTATACGAGTAGCCAGTCAGTAGATACGTGCAATATTATATTAGAAATAGAGACGTTttaatcaaaaatgaaaaaaaaaacattctatttAATGTACATTGTATTGTAAAGGATTAGCGTCGAACCTTCGCAGTGCATTGAGCGATTGCCTAAAAGTAACagatcatgtatttattaagtaaaaaaataatttttaaaaaagaatcaACCATTTATATAGAAATAtcattaaattgtaaaataattgctttaacTGTTTTATGCCTTTTCTCTGCCTGTTCTTTATTCTTACTATTGTATACCTGATTACTGctttgtattttcaaaactgcatttgtccccccccccaagaTTAATAAAACCTTGTATACCAAGTACTGAAATGacctctttctttctgtacatGTGATGTAATATCGTATTCACAGTTTTGGTGCTGACATCATTATTCACTGGGTTTattcaataaacaatatttatttgaaatggctTGGCCGTCTGTGTGTTCGTATTCTAGGTTCCCTGTCCTTCAGGGGGCCAGACCTCCGTGTTGC

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0070060 'de novo' actin filament nucleation biological_process
GO:0070358 actin polymerization-dependent cell motility biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0031252 cell leading edge cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K24045 JMY; junction-mediating and -regulatory protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009948 True 9644 mRNA 0.46 8 6700420 6724635

Neighbor

gene id symbol gene type direction distance location
AMCG00009949 NA coding upstream 14571 6684767 ~ 6685849 (+)
AMCG00009945 bhmt,LOC105015174 coding upstream 29934 6665690 ~ 6670486 (+)
AMCG00009940 scamp1,LOC107599399 coding upstream 161510 6530064 ~ 6538910 (+)
AMCG00009935 pde8b,LOC106568179,LOC106563036,LOC106928739 coding upstream 415429 6249900 ~ 6284991 (+)
AMCG00009934 NA coding upstream 458853 6225536 ~ 6241567 (+)
AMCG00009953 NA coding downstream 72294 6796929 ~ 6810324 (+)
AMCG00009955 NA coding downstream 86429 6811064 ~ 6814174 (+)
AMCG00009952 NA coding downstream 89647 6814282 ~ 6833737 (+)
AMCG00009954 NA coding downstream 133797 6858432 ~ 6877987 (+)
AMCG00009958 setbp1,LOC107555500,LOC107756308,LOC107703262 coding downstream 278368 7003003 ~ 7010244 (+)
G76555 NA non-coding upstream 532112 6167611 ~ 6168308 (+)
G76550 NA non-coding upstream 533805 6161456 ~ 6166615 (+)
G76486 NA non-coding upstream 749600 5947878 ~ 5950820 (+)
G76484 NA non-coding upstream 754367 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 799438 5897310 ~ 5900982 (+)
G76658 NA non-coding downstream 17297 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 29886 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 66131 6790766 ~ 6792207 (+)
G76770 NA non-coding downstream 450844 7175479 ~ 7231357 (+)
G76799 NA non-coding downstream 546200 7270835 ~ 7271745 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 614614 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 931368 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 1452239 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1779536 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3931912 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 317962 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 3578291 10302926 ~ 10313486 (+)
G77423 NA other downstream 4424991 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 4565268 11289903 ~ 11389245 (+)
G77541 NA other downstream 4976071 11700706 ~ 11701081 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01080659_00000034_00004172 NA coding CI01080659 null 34 ~ 4172 (+)