AMCG00009952


Basic Information

Item Value
gene id AMCG00009952
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6814282 ~ 6833737 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009952
ATGGAGGCAGGAGCTTTTGCATCTAATCTAAATAGAGATGTAGAATCTATTTCATCATCAGCACAACAAATTTCAAACGTCCATAATCCTGGAGAACCAATAGAAGATCCTGATGGTGAGAAAGAGTTATTTAATATTGTCTGTGAAGGCTATGAAATACTGAACATTATTGTACCTCCAAAGATGTTGACAGTTGATGAAGAGGAAAGTAGTTATATGCCTGATAACTTGTCATATTTGGAAGAAAATCCACTAATTAAATCCAAAGTTATAGAAGACCTGACAGAAGAGGAACAAGCTCCCATGTCTGAGAGAGAAACTGAAGAAACGGTGAAAAAAGTGGTGAGTGAATCAAAGACAGAAGCAGTTGAACAACAACAGGAAATGGAGAAACTGGAAGAAAATGAATCTATAAACCTTGAAAAAGACATTATACCAAATAATTTGGAATCAGAGGAGAATGCAGCTGAGCAACCACctaaaagaaatggaaatgggGACTTGGATTATTTTGAGAAGTTCACATTGTTAGATGACCATGTGCCAGAAACCAAACCTTTAGACACAGAAAATGAACCCTCTACGACCCAAGAGCAAGAATCACCACAGAGTATATCTGTCTCTAAAGACcgtaatgtgtttgtttttgtagatgATGTAGAAATTGCAAGTGAACATTTAGATGAAGTATTTTATGGAAGTCATCTTCTTCATGATCCGGAGGATTATtccacaaacaagcaaaacacagaGGACGAAACAGAGGTCAAAGCAGATGCAAGTCAAAAGTGCAAGCCCAAATTCAAGAAAAGTGGTACAGCTTTATTCAGCAATGAAGAGGAGAGTCTGACACGCTGTTATTATACAACAACTACCAAAATAATTGATCAATTTCTCTTAGAGGAACCACCAGCTATGTCATTTCTCTATACAGATCTGTATGAACAAGCagttggagaaaaaaagaaagatgacaGTGAACCTTCAGATGAGGAGAGTGTTGTTTCCGAAGGGACCTTCACAAGGAGGCTGTCAGATACAGAGGATAACATGGGTGGGTACTTtgaaaaatatagtttaaaagaTGATGTTCCATTATCTGCCGATGAACCACAAACTGAAGAAGATCAAGAGGGAGTTGAAGTAAGAATGTGGTGTCAAGATGAATTTAAGCTCACTGGTAGTATTACAGAGGAAAAAGCAGAAGCTGTCATTAGGGAAGTTGAAGTGTTTGCAGAACCTTCTGGCAGGATCCCTGAGTTGTCACCATGTGAAGAAAATGACCAGCTTTTTGCCATAACAGAGGAAATATCAGAAGATTTAGATTTCCAGCCTGTGTTTGATGATGAAAACACTGTCTTAACAGAAGAAATGGAAACAGTTAGCAAGAGCCCAGAGTTATCTGATGAAACTCTGAAAGTGAAGGAAACACAGCCAATGGAAGAACAGAGTGAGGAAAACCTTTGTGTTCCCCATGGGACCGAAATCAGTTACGTCTCCGAGCATGCAGAACTCTCAGAAGATATTCATAGTGAGGAAACGTCAGAAGTTCAGGTTTTGATCCAAAGTCACAAGGAAATTCTTATGGAaaaagaagaagatgaagaggaAGTAGGTGAAACTGATCAAACCATGGCAAGTGTTGAAAGTAAGCATGAAGATATCCTGGAAGATCAGGTGCTCAGTGAACCTTCAGAAGATATGTATTCAGCTCCAGCCAAGCAGGAATCCACAGCGGACATCCCTGTTTCTGAAATTGCTGACAGACCAGAACAGGCAGTGCAACCTACCCCTGAGAGTGAGGCTGTGTCAAGCTTTGAGTTGGACCTGAAGCAACCAGAGAAAGCAGCTGAGCATGGTGAAGTTTCGCTCATCTCGGACTGTAATGAAAGTAGGGAAGTTATATTAGACAGAGTAGGTGGCACTCCACAGCAGATCAGTCAGAGTAAGGGAGCCCCTGACACGACTGAAAAGGTAATCGACAAAACCCATGAGAAGGATGTTGAAGTTAATGAAGGTCTACAAAATGTTCAGGAATGGGATAGTGCCTACCTGTCCGCTGCAGGATCAGATATTTTAGTGAGGAGTGAAGAGCAGGAAATAGCAAGCTCACTGCAGCTTCCAGGTAGAGCAGtaccagaaaataaagaaaatgttatgccAGAAAAGCAGGATAGGGCTGTACAGACTGTGGATGAAATTTCTCTTCTTAGGAGTGTGGCACCCTGTGAAGAACTTTCACAGCTTGGGAAGGAGGATGTTCATTCAGAGCCAGAACTGTATCAGGGACATGAAGAAGAGGCAGCAGAAACCTTGGGCTATGAAATGGTCACCCAGCAAGAGGTGCAAGAGGACTGCACAGCATCAGAAGCAGACCTGCTGAGGGACAGGGAATACGTCAGCGAAGGAACCGAGGAACACCTTGAGCAGGGCTATGAATTTGTAGATGAGATAGGTCAAGTTTTGCCTGCAGTAGAAGCGGAGTATGAGATCATTGAGGATTTAGGCAGAACTCCCATATCAGAAGGTGAACTTGAGCAGAAGGAACCCAAAAAACCCACATTGGACACATTCTGTCTGACCTGCAGGTgtcccatctcagccattgatAAGCTCTTTGGAGATCACCAAGATCACAGTGTGTCCACATTGGATAAGGCCCACAATGACATAAAGAATAAACTGACCGAGTTGATCGCAGATTTGCAGGGACGAACGGAAAAGATTGAGGATCTCGTGGCCGAACTGGAGCTGGCGTTCAACACTGTGGAGGAGAACTGCACCAAGGCGGAGCAGGGTCTCGATGAACAGAATGATGAAATGATGAAGACGGTCCTGGAGCAGTATGAGGACATGTCACAAAAGATGGAGGACgagaagaaacacaaactgGAGCAGCTCTATGACCAAATTGTCACTTTCCAAGAGAGCATCGAGTCTGCCAAGGAGACCCTGGAGAAGACCGTGAAGGAGGTGGAGCAGCCCGATGAACTGGCCTTTGTGACTTCTGCCAAAGACATTAACAGGAgCCTGAACAAGGCCTTGCAGACGACAGTGTCACTGGAGCTCACGCCCAGCGCCTTCCCCGTGTTTGAAGATTATGCAAAAAGCACTTCAGGAAATGGACACAAATTACTGAAAGGCATTGCTGctgccaCTGTGTCTTTGTCCTCTCTGTCCCCTCTGTCCTCAGTTCCTCAGACACCTCGAGTTCAGCCACAGGAGGCCAACTctgccaccagcacctcagtcACAGTCTACTGGAAGGTCAATGAGGGTGATGTCATCGATTGCTTCCAGGTGTACTGTATGGAAGAGCCTCAAGGAGCTATGTCTGAAGAATACAGAGTGACAGTGAAGGAGAGCTACTGCACGCTAGAGGATTTGGAGCCAGACAAGTGCTACTTGGTGTGGGTCATGGCAGTAAATTACACAGGATGCAGTTTGCCCAGCGAGAAGACGTCTTTCAGAACAGCTCCCTCCAGCCCCATGATCAAGACCGAGGAATGCACAGTTTGCTGGGACTCGGCCACCATCCGCTGGAGCTCACCCAACCTCTCCGCAGTGGAGTCCTTCACCCTGGAGTACTGCCGGCAGTATGCCTGCGAGGGAGAGGGGCTCAGGTTCGTTTTAAAGGGCCTGCAGCTTCATGCTCCCCACAACACCTGCATCTTAAAATCGtgttctttttgtaggtcaatATCTGGTGTGAGAAATTGTGAACAGAAGGTCCTCTTACATCCGAATGAGAATTACCTTTTCTACATCAAAGCTGTGAACTATGCTGGAGCCAGTGAGCAGAGTGAAGCGGCCCTCATCTCCACCAAAGGCACCAGGTTCCTCCTGCTGAAAGAAACCGCCAACTCAGCCCTGCTCCTGTCCGATGACAAGACTACCATTCACTACCCTGAGCACACCTTCAGGCAAAGAGCCACCCTCAACGATTGCCTGGGGATCCTGGGAGAGCTCCTGCCTCCTCGTGGGTATCATTACTGGGAGACGGCAGTGGGTGGCAGTGAGGCCTACAGGATTGGTGTGGCCTACCCGTCCACACCACACGACAGCCCGTTAGGACAGAACAGCACCTCGTGGTGCATCCATTGCTACACAACACCCACAAGCTGCAGGTTCGAGTTCCTGCACAACAGCGTGCAGGCCGACATTCAGGTGGTTGACGTGCCCGAGAGGATTGGGACGCTGCTGAATTACCGTCACGGAAGGCTGTTGTTCTTCAACCCACAAAACGGACAGTTACTCTGCTCATGCCGCCACAGGTTCACAGAGGCCTGCCACCCTGCCCTGGCCGTGGAGAAGCCGGGCTCGCTGACCCTGCACACAGGGATGGAAATGCCAGAGCTGCTGAAACACAGTTAA

Function

GO: NA

KEGG:

id description
K24480 CMYA5; cardiomyopathy-associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009952 True 4374 mRNA 0.46 12 6814282 6833737

Neighbor

gene id symbol gene type direction distance location
AMCG00009955 NA coding upstream 108 6811064 ~ 6814174 (+)
AMCG00009953 NA coding upstream 3958 6796929 ~ 6810324 (+)
AMCG00009948 NA coding upstream 89647 6700420 ~ 6724635 (+)
AMCG00009949 NA coding upstream 128433 6684767 ~ 6685849 (+)
AMCG00009945 bhmt,LOC105015174 coding upstream 143796 6665690 ~ 6670486 (+)
AMCG00009954 NA coding downstream 24695 6858432 ~ 6877987 (+)
AMCG00009958 setbp1,LOC107555500,LOC107756308,LOC107703262 coding downstream 169266 7003003 ~ 7010244 (+)
AMCG00009966 NA coding downstream 348892 7182629 ~ 7183235 (+)
AMCG00009960 NA coding downstream 359437 7193174 ~ 7204644 (+)
AMCG00009961 NA coding downstream 457327 7291064 ~ 7292902 (+)
G76663 NA non-coding upstream 22075 6790766 ~ 6792207 (+)
G76659 NA non-coding upstream 59346 6754521 ~ 6754936 (+)
G76658 NA non-coding upstream 72043 6741932 ~ 6742239 (+)
G76555 NA non-coding upstream 645974 6167611 ~ 6168308 (+)
G76550 NA non-coding upstream 647667 6161456 ~ 6166615 (+)
G76770 NA non-coding downstream 341742 7175479 ~ 7231357 (+)
G76799 NA non-coding downstream 437098 7270835 ~ 7271745 (+)
G76807 NA non-coding downstream 447239 7280976 ~ 7287399 (+)
G76827 NA non-coding downstream 600919 7434656 ~ 7435547 (+)
G76859 NA non-coding downstream 782221 7615958 ~ 7648166 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 728476 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 1045230 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 1566101 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1893398 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 4045774 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 208860 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 3469189 10302926 ~ 10313486 (+)
G77423 NA other downstream 4315889 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 4456166 11289903 ~ 11389245 (+)
G77541 NA other downstream 4866969 11700706 ~ 11701081 (+)

Expression


Co-expression Network