AMCG00009959


Basic Information

Item Value
gene id AMCG00009959
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 7042597 ~ 7062734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009959
ATGGAATCGAACAGAGAGGCAATGGGAGTTAATAAGAGCTCCCTTCCAGAACCTTCAAGCCTGCACACCAAACCACAGCAAAAAAAGGTCACAGGCAGCCCATCTCCAAATCCATTCGGTTCTGTGATGACTGGCTCCCTTACTCAGCCATCCTCTGTAGTTACACCACAAGCTACCATACAGCCGGATAATAGCAGGATGATCCTCAACTCCTTAAACAATGAGAGGGGTTTGCAGGAGATGGCAGGGCAAATGTTTGGAAACATTAAGAGGAAGTATGGTAGGAAAGATTCGACGAGGTGCATGGCGGCCCAGAACCCAGATATGCTGTGGGGCAAAAAGGCCGAAAAGGATTTTGAGGCTAAAACCCAAGTGAATGTAAAAGAGAAGCAAACCCATGAgccagaaaaaacaacagaaccaCCCAGTGGGGCCAGTGAGGGCACTGGAAAGGGTGCAGAGAAGGAGGGCGAAGATATAGAAGGATCTGTTCCATTGCAGATAGAGGACTCTAAAGGCCATCCTGGGAGGAAGAGGCGGTATCGACGGTCAATAAAAGATCAGCTCCCAGTGGAGAACCTAGTAGAAGACATGCAGGACTCCGAGTTGGCTGGAAAGATTGATGGGGGCAGTAGAGGTTTTTCTGAAGCAAAATCTGCCACTCTCAACAAGATCGAATCGAGGACGTCCAAACTGGTGGAGAAGGAAGGGCAGTCTGAGGCAGCTGAAGTGAATGCAGTGGCTGTAACTGAGCTTTCGGAGATCTGTAGAAATAGGCTGCGAAAAACAGCACCTGTGGGGAGACCTAAACTCATGATTGATTCAAGTCGAGCTGTAAACAAGCAGGCTAACGAGAAACAACCGAAAGCCAAGGGAAGGTGGTCTTACATGAAGTCCAAAAATCCTAGTCTTCAGAAAGACAACGGCAGTCCAGCAGCAGCTGTTGCAGAGCCTCCTTCCGCCTACCCTATCACACCCTCTAGCCCACTGTATACCAATACTGACAGCTTGACTGTCATCACACCTGTTAAGAAGAAGCGCGGGCGGCCAAAAAAGCAACCGCTGCTCACTGTTGAAACTATACATGAGGGAACCTCCACAAGTCCCATAAGCCCCATCACTCGGGAGTCACCTGGGACTttgaagaaaaggagaaagaaaagaagttTGGCAAAGCTAGTGCAGATCGCTACAGCAAATGCCTCCCCTGCTAACCAGATGAAGCTTAACAAAAAAGTAGGAAATTTGGGTGTCCTGGATAAGAAGACAATACGgacaattaacaaaatgaaaatggtcaAGAGGAAGAacatattaaatgaaatattgtcCTGTTCTACTAGTAGCAATCTTGCTCTGAAGTCCAAGGTCCCCATGTCGAACGCCGTTTCAACTGTAGCATCGACCATAGAAGCCCGTTTGGGCAAGCAGATCAATGTGAGTAAGCGAGGGACTATTTACATTGGCAAAAAGAGGGGTAGAAAGCCCAGAGCTGAGATGCAGTTTCAGCAAGATGAGCACAAAGCCAGTGATAAGCACCCGGTGCCTGTTCCTAGCCTGTTTGAGAACCCAATAGTGCCTTCTAATCCACAGCCCACAGCTGGGATGCCTTCTCCCAGGGCCACACAGCCACCTGCTGCTCAGACTGCTGGAGCTGGTGGGCTGCTATGCCCTGCCACCACAGAAACCAACCTGCAGGAGCTGAAGACCATGCCAAATCTGCAGCCTATCAGTGCGTTGCCCACTAAAGCCCCCAAAGGCCTACACAGCAGCAACTGGAAGCTCTCTCCTCCTAGACTCATGGCCAACTCACCTTCTCATCTCTCCGAGGTAGCTTCTCTCAAAGAAGTGACCCTGTCTCCTGTAAGCGAGTCCCACAGTGAAGAGACAATACCCAGTGACAGTGGGATCGGCACAGACAACAACAGCACATCAGACCAAGCTGAGAAGGGCCCAGCATCCCGACGGAGATATTCTTTCGACTTCTGCACCCTTGAGCCGTCTGAAGCTGCTGCACGTGAAGCCAGCAACAAAGCCAAGAGAGGGCACTGCCCCAAGCACGTAACTGCTGTAGCAGTAAACCCTTACCTAGCTCACGAGGGCctgaaaaaacagaagcatCGGCGCAAGCGCAAGGGTCTTCAGAGCCGAGATGACCTTCAGTTTCTGGCTGATCTTGAGGAGCTTATTGGCAAGTTCCAAGTCTTCCGCGTCTCCCACCGAAGCTACACCTTCTACCATGAGAATTCATATCCTAGCATCTTCCGGATCAACTTTGACCACTACTACCCTGTGCCGTACTTCCCTTATGACCCTCTGCCCTACCTTCGCAGGAACTCTGAGATGAAGTCTAAGAAGAGACGTGGCAGGCCGGCCAAAGCCAACGAGCCAATGACAAAGATGCCTTTCCTCCAAGGGTTCGGCTACCCGATCCCCAGTGGCAATTACTATGCACCCTACGCAATGCCTTATACATCGATGCCTATTGCCACCAGTATGATGAACTTGGGCTACTACGGCCAGTATCCAGCGCCTCTGTATTTGTCCCACACTCTGGGGGCAGCAGCTTCTCCCTTTATGAGACCAGCAGTCCCACCTCCCCAGTTCCACTCTGGTGCTCATGTAAAATTGACGGCTGCAgccaaacacaaaaccaaacacagTTCGCACCAGATGCCCTCTAGTGGAATGGATGAAGCCCAGTCGACTTTAGTGGCTCCCAAAGGCGGTGCCAGCAGCTTGCCAAGTGGCCGCCTTCACAAACGCAAacacaagcacaagcacaaaCACAAGGAAGATCAGCTGTCCAGCTCCCAGAGAGAAGATCTAGGAGGACTCTTCAGTGGAGCAAAGAACCCCAGCTACTTGAGCCTCCTGAGCGAGAGGCTTGGGATGGCTGACAAAGAGCCCTCTTTGCAGAAGCATAAAGACAAGCAACGGAACCAGCAAAGCACAGACACTCTGCAGAGAAGTTCCAGGAACGTCTTTGAAGTAGATAACCTCTCGACCTTGTCCCTCTCTGATTCGCAATGGAAGCGCGGCCGGGAACGAGCTGAACCCACGGTCGACTTCCACAGTGCCTGCCCCCGCCGGCATCCCGACAGCATGAGGACCAGTTCCGACCTATTTGGGGACCTGCAGTCATCACGGGATGGCGACTCTGGGATCGGCAGCAGAAGGCGGAGCTTGGAAAGCTTTGGGGTGTACAGGGAGCAAAACGTGGCCCCGTTTAAGAATTGCAGAAGAGAGAAGGTACAGCAGATGTATAATTGTCCAACTCCGTCATTGTCCGACAACAGCCCACCTTTGAAGAAGAGGTTCAAACGGAAAGAGATTGAAGAGATTCAGTGTGAAGTGCGCAAGATGTGTACTTTCTCCAAGATCCTTTCCACGAAGAAGAATCTGGATCATGTCAACAAGATCCTGAAGGCAAAAAGGCTCCAGCGCCAAGCGAAGACCGGCAACAACATTGTgaagaagaggagagggaggcccaGGAAGCAGCCTTTGCTCTTGGATGAAGAGTCCATGGGTCAGATGCCTGTGCTGGAGAAATGCGTGGACCTTCCTGGAAAAAGGAACCTCCGCAACTTGCCAGAGCCTCTGGAGTTTTCCAACCAGGACTCCATCATGGATGCCATCGAGTCTGTGGTACATATGGCACGGCAGCAGCCCAAGTCGCAAGTGTCATAG
>TU95821
AGCACAGTGCATTTAGTACAATGGCAGTGCATTGACCAATCTTCCTTCTCGTTAAAAACTCTGCCCCCTTGTTCCGAATTCATCCGTTTCTGGACTGGTGGGAGGATGGCAATACTTTGGAATGAGACCTAATGAAGGCTGTCTCCCCAGCTTGGTACACGAGCGGTCTGACTGTACATAGAAACATATTCTTCTTACAGTACATGCCTTTTCTCTGTACAACGTGAttaagaaagtatttttgacTTACTGGCTTATTAAAAAATAGTGAAGTGTTGTACCCTGGAACATGACATTTGGGTATTGTTTTTAACCAAAAATAGAGATGGGTGTGACTCGAGACACGTTTGTTTTCAGATAGAAGATTCCGATTCATTTATACGAAGTGGGTACGCCACATATATGGGAGTATCAGGTTTTATCAATGGAATGAATGGAGCATTCATAATATTGCATGCCATTCACATAGCTGTTCAAGTACTTTTGacttcattataatattttaatatcaatacaattcttaattatgaaaacaaactcaGCACTTAGATCCTTAATTAagccttaatttaaaaaagtctgTCAGTCCCTTATTGACTAACATCCCAGAACAATTGACATACTGATACCAAAGTATCAATATATTTCACACAGATTTCTAAAAGTATTGATaactttgattatttaaataaaatacgaCCATTAACAGACATGAATGAAGCATTTTCAGCCAGTCAGACAAATTCACGTCAGATGCTAGAAGAGCTTTGCCAAGCTGTCCACTCTCAACTGATCTTTGTGTTCTCATCAAAGATGTGACTTGAAGGAAGAactagacaaaataaaataatttcaaatgaatagaTTAAGATCATAAGGTAAGAAAAACCGTGTATGCAGCTCACACAATAAGATACAATTTACAGTATTGCTACTGCTGCTGCACAGGATGGGAACACAAACACCAGCCAGGAGGCAGGGAGGGCAGGGGAAAGGACACAGTCTGTCCCAGCGCCTTTAGACTTCCCGTCTTCTCCAGATGATAGCACTGGAGGAAGCAAAGTAACTGAATTAGTTaccagatattttaaaattactaatTTCTAGAAACCAAAGTTGAAACCCACATTTTGGATTGTGGTGATTAGAAAGGAGGgggttttgaaaagcaatttatcttattttatgtcTCGCTCTCTTTCTTTGCAGTCATAGAAATTtcacatcaaaaaataaatgcagaatacCATGGCAATTGGCAATAATGAAGAACAGAAATGGGTACATAAAAGTCACTATCCATTTCATTAATACTAAATAACTACTGGAGGAAATTGGCTTAGTAACAATGATACTTCTATTCTCATCCATCATTGCAAGCAAGGacattgctttcagttttggGAAACATTCATGCTGTTCAAATGTCAGAATTGGTGTTGGTTTTAATGGGAGTCAAACATGGAAAGTaacaatcaactgaatttataCTATTTTAGAGAAGAAAGTTCCCTTTTACGCTCTGCCATTGGGAGAGGCTGTACTAGTTTAGTTTTTAACAGTTATTGATGTGCCTTATGTTTGTTTCCCAAGGCATAACATTTCTGAtcaaatttatataaaaaatggggACGCTAGAGCTATTCTTGGCATCTTTTTGCAACTCATTGTGCCTGAACAATATTATATCAATCCATACATCAGCGTGGTCCCTTCATGTGAACCAGAGCTCATGTTACTTCTGTTACTTAATATTCCTTAGTTTCTTGGGGGGAgctatctttaaattatttttatcttaaattatttttaaaaatacatttataattcatcTTGAATTATATGAATCGGGTTGAAATatccatcatcatcattgttgACATTCGTCCAAGGGTTAACATTGCCAGGGAAGGCAGTGCAGTAGGAATGACAGGTCTCTGAAAGGCACCAATAGCGGAGGGACGAGGGTTATACCAGCAAATAATGAGTTCAGTTGGTTAATTCAGAGCTCAGGTGGAAGGAAACCAGCTGATCCTATGGCCCCTCAAGGGACCGAGGTCATACACCCCTGCCCCTGACCTGCCTATAGCTCCCTCTTCTGTGCCCTCACGATTGTATCCCAACACATACTGCATCTGTTGTGGCATCCCCACTTCTTAGTTTGCTATGCATCAGGTTATACAAGTAAGCTGCTGGTGGATTAAGTCTTCACAAAGAACTGTTGAATCGATCAGTAAATTCAGCTTTCTGTTTCGGGTCCACCCTTTCACAAAGATAAATAAGTggtcttatttaattttgaataaaaaaaaaaaacaataatgtaaaaaaaaatatatatataataacaataatagtaatactaataataataatagcaaattTGTGCAAAAAGTGACTATCATTGCAACTATTACTGCAAAGGATCAGAAAGTCTTGTTTGCAGTGGAGCCTTAATCTGAAGTTTAATTAACctaaaagtaaattgtaaataatgtaattaaactggATCTGACTGCATGGATGCAAactgtgttttactaaaacgtGGGTCTACAAAAGGGTTCCAGTCCCAGACTACAGCCACAGCTGTAGAGCGTGTTGAGACTAAAGATGACTTGTGTAGAATCCCAGCCAATACAAATGGGTAATGTTGACTAGCAGCTAATTCTTCAGTCAATTGTACAGGCTTGTGGACCTGCTTGGTTTGGGACTGATGCTAAATATCATCCTGAGACCTTaccaacaaaagaaaaggctgaATGATTTCCATTGCAAAAGTGTGAAGCATTACCATGACTGGGCTTCATGGTTCTTTTGTAGTAAAGGAATTTGAATGTCCTAATCTTACCAAAataggtttatttatatacCTATGGTCATATATGGTCATATGGTCATATATATAATGACCATTAAAGGTACAGAGAAAGAAGAGAGGGTAAGATGTCAAGCCAGCATATAGGAAACCAGGTAATTATTTATTGCTATATTGAAGCCTAAAATGCCAGATACTCTACCAGCCGAAATACCGGTGCCTTCATAAGCTTAAAAGTATTCTTGTTATCTGGTTCTTAAGCTTCAGCAATAAACCATATGGTATACCACACTCTCTGGGGCATCCAGAGGTGTTCTGCATGGGTCTTGAACTGTTATAACTAGTGTTATGAAAACAATAGGCACTACACACAAAGCTGAGATCTTGCCCGACTGTGAAACACTATTAAGGGTGAATCTGAAAGAATACCAGAATTACTGCTCTCACGGCAACACAGATTGCATCATCAAGgtgtttttaagatttttaacaATACTGTTGTTTcgaaaataaagtgcaaatgaagtattgaagaaaaaataaataaacgtaaCGTACATTACAGGAGCACAACAAGAGCTCTGACCGACCGTGCTGGCTTATTTCAGTTTGTATACATAGTGTTTTTTAACCTCTTTTTAATagagtggatttttttttccttttttgcatGTTCTACTTgattgtatgtatacatattttagacAATGGGaaaagttatttgtattttaattaaattcggAGGAAAACTTGTACAttgtttgatatgtttttttgtaatggatttttaattcatgaagcatttttgtacattgtatggatattaaaactgcaaatatttggcatatatatataggtatatatcgGGTAAAaattgcatacatatatatttatatatatatgctggcATGCTTTTGGTCATGTTTGTTCATGAtctagttgttgttgttttttttttccatttttttttttttttgttttgttttttttcttaaagaaaaGCTCATCTTTTTGCTGCCATTTCCTGGTTAGCAGTATAgagcacttaaaaataaaattaaaagttgaCCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009959 False 3693 mRNA 0.51 3 7042597 7060058
TU95821 True 3891 lncRNA 0.36 1 7058844 7062734

Neighbor

gene id symbol gene type direction distance location
AMCG00009958 setbp1,LOC107555500,LOC107756308,LOC107703262 coding upstream 32353 7003003 ~ 7010244 (+)
AMCG00009954 NA coding upstream 164610 6858432 ~ 6877987 (+)
AMCG00009952 NA coding upstream 208860 6814282 ~ 6833737 (+)
AMCG00009955 NA coding upstream 228423 6811064 ~ 6814174 (+)
AMCG00009953 NA coding upstream 232273 6796929 ~ 6810324 (+)
AMCG00009966 NA coding downstream 119895 7182629 ~ 7183235 (+)
AMCG00009960 NA coding downstream 130440 7193174 ~ 7204644 (+)
AMCG00009961 NA coding downstream 228330 7291064 ~ 7292902 (+)
AMCG00009967 riok2 coding downstream 457159 7519893 ~ 7528002 (+)
AMCG00009973 NA coding downstream 469153 7531887 ~ 7552651 (+)
G76663 NA non-coding upstream 250390 6790766 ~ 6792207 (+)
G76659 NA non-coding upstream 287661 6754521 ~ 6754936 (+)
G76658 NA non-coding upstream 300358 6741932 ~ 6742239 (+)
G76555 NA non-coding upstream 874289 6167611 ~ 6168308 (+)
G76550 NA non-coding upstream 875982 6161456 ~ 6166615 (+)
G76770 NA non-coding downstream 112745 7175479 ~ 7231357 (+)
G76799 NA non-coding downstream 208101 7270835 ~ 7271745 (+)
G76807 NA non-coding downstream 218242 7280976 ~ 7287399 (+)
G76827 NA non-coding downstream 371922 7434656 ~ 7435547 (+)
G76859 NA non-coding downstream 553224 7615958 ~ 7648166 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 956791 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 1273545 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 1794416 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 2121713 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 4274089 2752260 ~ 2768508 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 3240192 10302926 ~ 10313486 (+)
G77423 NA other downstream 4086892 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 4227169 11289903 ~ 11389245 (+)
G77541 NA other downstream 4637972 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 7929185 14991919 ~ 15032181 (+)

Expression


Co-expression Network