AMCG00009976 (eef2l2,LOC108255789,LOC108414462,LOC107681082,LOC107746808,LOC107676651,LOC107552597,LOC107708638)


Basic Information

Item Value
gene id AMCG00009976
gene name eef2l2,LOC108255789,LOC108414462,LOC107681082,LOC107746808,LOC107676651,LOC107552597,LOC107708638
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 7674564 ~ 7688493 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009976
ATGAGACCGCAGAGGCTTCCGTACGCCGTACAGCAGCCTGGATACGGTGCAGAGCTGCAGCATAAGCGCCGACTCGACGTCACAGTGTCTCTTTCCCCCCAGAGCCCTCCAGCGGAGAGCTACCCGTCCAGCGACTGCAGAGGCCGAGGCTCGCATTTGGGAGATCAGTCGGCAAAATGATTCCGGATGTGTGTCTCGGTGAACTTCACTGTAGACCAGATCCGGGGGATCATGGACAAGAAGTCCAATATCAGGAACATGTCTGTGATTGCGCATGTTGATCACGGCAAGTCAACTCTGACAGACTCCTTAGTGTGCAAAGCAGGCATTATTGCCTCTGCACGGGCAGGGGAGACCCGATTCACAGACACCAGGAAAGACGAGCAGGAGAGGTGTATCACCATCAAGTCAACAGCTATTTCTCTGTACTATGAACTGAAAGACAATGACTTGGCCTTCATCAAACAGTGCAAGGATGGCTCTGGTTTCCTCATTAACCTGATTGACTCCCCGGGCCACGTCGATTTCTCCTCTGAAGTGACTGCGGCCCTGCGCGTCACAGACGGCGCGCTTGTAGTTGTAGACTGTGTTTCAGGCGTGTGCGTGCAGACGGAGACGGTGCTGCGGCAGGCCATCGCCGAGCGGATCAGGCCCGTCCTGATGATGAACAAGATGGACCGGGCCCTGCTGGAGTTGCAGCTAGAGCCTGACGAGCTCTATAACACCTTCCAGCGTATCGTGGAGAGCGTCAACGTGATCATCTCCACCTACGGGGAAGGGGAGAGCGGGCCCATGGGGAACATCATGGTGGATCCAGTCATAGGAACTGTTGGGTTCGGATCAGGCCTTCACGGCTGGGCCTTCACTCTGAAACAGTTTGCAGAGATGTACGTCGCCAAGTTCACTGCGAAGGGCGAAAAGGCACAGCTCCCCCCTGCGGAGCATGCCAAGAAAGTGGAGGACATGATGAGGAAGCTCTGGGGAGACAAGTATTTTGATCCTGCAGCAGGTAAATTTAGCAAGACAGCCAACAACGCCGAAGGCAAGAAGCTGCCTCGCACTTTCTGCCAGCTTGTGTTAGATCCCATCTTCAAGGTCTTTGACGCCATCATGAATTTTAAGAAAGAGGACACGGCCAAGCTGATCGAGAAACTGGACATCAAGCTGGATGCAGATGACAAGGAGAAGGAGGGAAAACCGCTTCTCAAGGCAGTGATGCGACGTTGGTTGCCCGCTGGAGACGCCCTGCTCCAGATGATCACGATCCACCTGCCCTCCCCGGTCACTGCCCAGAAGTACCGCTGTGAGCTGCTGTACGAGGGCCCGCCTGACGACGAGGCCGCCCTGGGTATCAAGAACTGCGATCCTAAGGCCCCTCTGATGATGTACATCTCCAAGATGGTGCCCACCACTGACAAGGGCCGGTTTTATGCCTTTGGTCGGGTTTTCTCTGGTATTGTTGCCACTGGCCAGAAGCCCATCGAGGATGTGCCCTGCGGGAACATCGTGGGCCTGGTGGGGGTGGACCAGTTCCTGGTGAAGACTGGTACCATCACCACCTACGAGCAAGCACACAATCTGCGAGTGATGAAGTTCAGCGTGAGCCCTGTGGTGCGGGTTGCGGTGGAGGCCAAGAACCCCGCCGACCTGCCCAAACTGTGTATCATTGAGGAGTCTGGAGAGCACATCGTGGCAGGAGCTGGGGAGCTGCACTTGGAAATCTGCCTTAAAGACCTTGAGGAAGATCATGCCTGTATTCCCATAAAGAAATCCGACCCGGTGGTGTCTTACCGCGAGTCAGTGAGCGAGGAGTCCAACCAGGTGTGCCTGTCCAAGTCCCCCAACAAGCACAACCGCCTCTACATGAGAGCGCGGCCCTTCCCCGACGGGCTGGCAGAGGACATCGACAAAGGGGAAGTGACCGCACGGCAGGAGCTGAAGCAGCGAGCCCGGTACCTGTCAGAGAAGTACGAGTGGGACGTGACCGAAGCGCGCAAGATCTGGTGCTTCGGACCCGATGGCCTGGGGCCCAACATGCTGGTGGACATCACCAAGGGAGTGCAGTACCTGAATGAAATCAAAGATAGTGTCGTTGCTGGCTTTCAGTGGGCAACTAAGGAGGGTGTCCTGTGTGAGGAGAACATGCGCGCGGTGCGTTTTGACATCCATGATGTCACACTGCACGCCGACGCCATTCACCGCGGGGGCGGCCAGATCATCCCCACCGCCCGCAGGGTCCTGTACGCCTCCGCGCTCACCGCACAGCCCAGGCTGATGGAGCCCATCTATCTAGTGGAAATCCAGTGTCCAGAACATGTAGTTGGGGGCATCTACGGTGTCCTGAACAGGAAGAGGGGCCACGTGTTCGAGGAGTCCCAAGTGGCAGGCACACCCATATTTGTTGTCAAAGCCTACTTGCCTGTAAACGAGTCATTTGgTTTTACAGCAGACCTGAGGTCCAACACTGGGGGCCAGGCTTTTCCCCAATGTATCTTTGACCACTGGCAGATCCTCCCTGGGGACCCCTATGATGAGAACAGCCGCCCATGGCAGGTGGTGGTAGAAACCCGCAAGCGTAAAGGCCTGAAGGAGGGCATCCCTCCTCTGGAGAACTTCCTTGATAAATTGTAA

Function

symbol description
eef2l2 Predicted to enable GTPase activity; ribosome binding activity; and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within translation. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Is expressed in brain and musculature system. Human ortholog(s) of this gene implicated in glaucoma and spinocerebellar ataxia type 26. Orthologous to human EEF2 (eukaryotic translation elongation factor 2).

NR:

description
PREDICTED: elongation factor 2 isoform X1

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0009790 embryo development biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009976 True 2631 mRNA 0.56 17 7674564 7688493

Neighbor

gene id symbol gene type direction distance location
AMCG00009972 NA coding upstream 29621 7643535 ~ 7644943 (+)
AMCG00009970 NA coding upstream 32038 7638579 ~ 7642526 (+)
AMCG00009969 dnajb5,LOC107746810,LOC107681063,LOC107708641 coding upstream 42712 7614936 ~ 7631852 (+)
AMCG00009971 NA coding upstream 86318 7562494 ~ 7588246 (+)
AMCG00009973 NA coding upstream 121913 7531887 ~ 7552651 (+)
AMCG00009980 NA coding downstream 172658 7861151 ~ 7869890 (+)
AMCG00009979 NA coding downstream 194141 7882634 ~ 7888072 (+)
AMCG00009984 zfr,LOC107681158,LOC107746805,LOC103397483 coding downstream 315344 8003837 ~ 8029681 (+)
AMCG00009985 NA coding downstream 346130 8034623 ~ 8053793 (+)
AMCG00009982 golph3,LOC107681169,LOC107552603,LOC106570936,LOC107746803 coding downstream 386712 8075205 ~ 8082608 (+)
G76864 NA non-coding upstream 21733 7651722 ~ 7652831 (+)
G76863 vcp,LOC107602017,LOC107552546,LOC107676650,LOC107708640,LOC107681079,LOC107393925 non-coding upstream 24373 7649490 ~ 7650191 (+)
G76859 NA non-coding upstream 26398 7615958 ~ 7648166 (+)
G76827 NA non-coding upstream 239017 7434656 ~ 7435547 (+)
G76807 NA non-coding upstream 387165 7280976 ~ 7287399 (+)
G76935 NA non-coding downstream 200990 7889483 ~ 7894390 (+)
G77012 NA non-coding downstream 625623 8314116 ~ 8317675 (+)
G77028 NA non-coding downstream 750014 8438507 ~ 8438786 (+)
G77049 NA non-coding downstream 1009185 8697678 ~ 8700117 (+)
G77073 NA non-coding downstream 1119858 8808351 ~ 8808607 (+)
AMCG00009959 NA other upstream 611830 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 1588758 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 1905512 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 2426383 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 2753680 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 2614433 10302926 ~ 10313486 (+)
G77423 NA other downstream 3461133 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 3601410 11289903 ~ 11389245 (+)
G77541 NA other downstream 4012213 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 7303426 14991919 ~ 15032181 (+)

Expression


Co-expression Network