AMCG00009982 (golph3,LOC107681169,LOC107552603,LOC106570936,LOC107746803)


Basic Information

Item Value
gene id AMCG00009982
gene name golph3,LOC107681169,LOC107552603,LOC106570936,LOC107746803
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8075205 ~ 8082608 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009982
atgtatattttcttgcaGGGCTACACATCCTTTTGGAACGACTGCATCTCCTCTGGGTTGCGTGGCTGTATGCTTATTGAGCTGGCCTTAAGAGGGCGTTTGCAACTAGAGGCCTGCGGCATGAGGAGGAAAAGTCTACTAGCAAGAAAGGTGATTTGTAAGTCTGATGCTCCTACCGGGGACGTGCTGCTGGATGAGGCTTTGAAACACATTAAAGAGACTCAGCCGCCAGAAACGGTGCAGAGCTGGATCGAGCTGCTAAGTGGTGAGACGTGGAACCCCTTAAAATTACACTATCAGCTGAGGAATGTCCGGGAGCGCTTGGCCAAGAACCTGGTGGAGAAGGGAGTGCTCACCACCGAGAAACAGAACTTCCTGCTTTTTGACATGACGACGCACCCCCtcaccaacaacaacatcaagCAGCGCCTCATTAAGAAGGTGCAGGAGGCCGTGCTGGAGAAGTGGGTGAACGACCCCCACCGCATGGACAAACGCCTGCTGGCCCTCATTTTCTTGGCCCATTCCTCCGACGTGTTGGAGAACGCTTTCGCCCCGCTGCTGGACGACCAGTACGATTTGGCAATGAAAAGAGTACGCCAGCTGCTGGACTTAGACCCCGAAGTGGAAAGTATGAAGACCGGCACGAACGAAGTCCTCTGGGCCGTTGTGGCTGCCTTTACGAAATAGGTATCTCAGAGAAAAGCGGACTGGTATATCTCATTCAAAACCTTGCAATGTCATGTAGTTTCTCCCCCGCCCTGTGTTCTTATGGGTCACCAAACTCAGCAGCGTTATCATTCTTTGAGGTGTTTTCTTTGCTTGTAGATAtacctccctctccccctcctcagTCGTCCTGCTCCCTCCATGTTCCCTGTGATATGTCATATTTGAATGCTCACATTGACTCCTTTTGaaaccagtttttttttgttttttttgtttttgttttttatataaaggtGAAGCTTAGTCTGGTGTTAAATCCACTGTGTGGGTGACCTTTTCTGAACATTATAATATTGAGGGGACTGATATGAAACCTAGATAAGGAATATGGATGGCAGTTATAACCTGGTACATTgcaggtatttttttatttatttcaacccctcccccccaccacctcttaCAGCCATTTCCCTTACACTTGTGCATTGTACAGCTCAAGATACCCCACTGTGACCTGTCCTGGAGACTTGCGGCATCGTTTTAGCTCAAGTGCCCCTTGTATATAGTAACCTACTCTGCGCAAGGGCCACATGAGGACCGTGTTCGTGTTTATGCTCTTGTGTAGCACAGGACATTCATAATTCACCTCTTTGCATTACAGGAAAACATTGCATTTGTGCATCAAAATGAAGCAAAACACTAGTTTATGAATTtactatttttctttccagcttttgcttttgttgatcTGAATGAACCGGTGTGATTATGTGTCCCTTCTCAAAGAGCTGATTGATCAATAAATGACCCCGAAAGACCTACAATGTGATTCGCTTTCATATGTGAGGAAGATTTCTGCTATGCGTTGGTCTGTCATACTGTTTAAAATCtctaatctgtttatttttataacttttaaataattgaaataataaatctaGCCAACATTGTTGTCTGTTGCCTAAACATCACTATTTAAATGGAGCAATCACGGGGTGGGTACATTCCAGTGTATTCTGTAAATAGTTTCTTGTAGATTCACACCCCTGTCCTAATAGCCGATTTCTCGGACCAGAATGCACCTGGCCTGCATCTTTGTAAACTCTAACAGTGGACAGCAGGTCTTTAAACAGCATGTCATTCTGGCGTAACATTGAGATACTCTGTAAAGGTACTCCACCCAATGactactttttaaatttgcCCCAGTGTACAGTTGTGGATGATGTTAATAATGACTGTGTAAAGGAAGCCTTtgaccaatttttttttttttttcttcctctccttctcgaGTGGAACTTTCCCTTTTATGAAGCAGGTGACTTTTTCACTGCGAACGTTCATGTATACAACTCGTATCCTGCTCCTACATCATGTTGCATGAATTTTAGTTTCTCATGATTCGCTGTCTTTAATGAAATGCTGATTTTTACTCATTTTGTATCACGTATACCTTTTGTTACTACATTCagcaaagtatttttctttcttttctttttctaaaaaaacaaaaaacaaaacttgttaCCTCTAATTCTGGCTTGCTTTACAGTAGCTTATGTTCActtaatgtatataatacatgGGGTGATAAATCGACAGTGATTTTGGAGTTATAGCTTAACTCATGACTGTGGGTTACAGGTAtctgaccttttttgttttttgttaatatgCTCTTGGAGTGAAAAATACTAGATAATGTATAACTGTAGACTTGAAATTAAAGGGATCCCTAATCTGCATACTTGCTTTTTACCATACAATAAACTAAGATCTTGAAAGTGCCTGAAA

Function

symbol description
golph3 Enables enzyme binding activity and phosphatidylinositol-4-phosphate binding activity. Involved in several processes, including Golgi vesicle transport; cell adhesion molecule production; and cellular response to rapamycin. Located in Golgi apparatus subcompartment; cytosol; and mitochondrion.

NR:

description
PREDICTED: Golgi phosphoprotein 3

GO: NA

KEGG:

id description
K15620 GOLPH3, GPP34; golgi phosphoprotein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009982 True 2472 mRNA 0.42 3 8075205 8082608

Neighbor

gene id symbol gene type direction distance location
AMCG00009985 NA coding upstream 21412 8034623 ~ 8053793 (+)
AMCG00009984 zfr,LOC107681158,LOC107746805,LOC103397483 coding upstream 45524 8003837 ~ 8029681 (+)
AMCG00009979 NA coding upstream 187133 7882634 ~ 7888072 (+)
AMCG00009980 NA coding upstream 205315 7861151 ~ 7869890 (+)
AMCG00009976 eef2l2,LOC108255789,LOC108414462,LOC107681082,LOC107746808,LOC107676651,LOC107552597,LOC107708638 coding upstream 386712 7674564 ~ 7688493 (+)
AMCG00009983 NA coding downstream 35827 8118435 ~ 8119318 (+)
AMCG00009986 LOC107601999 coding downstream 74210 8156818 ~ 8204133 (+)
AMCG00009988 parp8,LOC107746800,LOC107661236,LOC107708633 coding downstream 187509 8270117 ~ 8310270 (+)
AMCG00009991 NA coding downstream 312344 8394952 ~ 8395968 (+)
AMCG00009990 isl1,LOC107661270,LOC107374027,LOC107708623 coding downstream 322235 8404843 ~ 8430633 (+)
G76935 NA non-coding upstream 180815 7889483 ~ 7894390 (+)
G76864 NA non-coding upstream 422374 7651722 ~ 7652831 (+)
G76863 vcp,LOC107602017,LOC107552546,LOC107676650,LOC107708640,LOC107681079,LOC107393925 non-coding upstream 425014 7649490 ~ 7650191 (+)
G76859 NA non-coding upstream 427039 7615958 ~ 7648166 (+)
G76827 NA non-coding upstream 639658 7434656 ~ 7435547 (+)
G77012 NA non-coding downstream 231508 8314116 ~ 8317675 (+)
G77028 NA non-coding downstream 355899 8438507 ~ 8438786 (+)
G77049 NA non-coding downstream 615070 8697678 ~ 8700117 (+)
G77073 NA non-coding downstream 725743 8808351 ~ 8808607 (+)
G77126 NA non-coding downstream 1121734 9204342 ~ 9205423 (+)
AMCG00009959 NA other upstream 1012471 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 1989399 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 2306153 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 2827024 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 3154321 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 2220318 10302926 ~ 10313486 (+)
G77423 NA other downstream 3067018 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 3207295 11289903 ~ 11389245 (+)
G77541 NA other downstream 3618098 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 6909311 14991919 ~ 15032181 (+)

Expression


Co-expression Network