AMCG00009997


Basic Information

Item Value
gene id AMCG00009997
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8977954 ~ 8978388 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009997
ATGGCAGAAGTTACAATCAGACACTGGGTGAGAAGCCCTGTCCGTTACCAGGCTCTGTTTGAGGGAAGGAACTTGGAGGAATGCAAGGAGGACCACTGCTTATTTGCTCTGCCTGGGCCTTCCTTTGCTGGGCCAAGATGTGAAACTGCCACGGAGAGCAGTAACAGTAAACAAGGCGGAGAGACTGCTTTCCAGGTGCTGTTAGATGTGGCTCAGTTCCGCCCTGAAGATATCCTCATTCAGGTTTACGAGGGCTGGCTCCTGGTCAGAGGCCAACACAGCCCCAGGATGGACGAACATGGATTCATCTCCAGGAGCTTCACCCGACAGTACAGGCTGCCAGACACCCTGCAGGTGGGAGACCTGAGAGCCATGCTGTGTCATGATGGGATTCTGGTAGTGGAAGCCAAAGACTGTGGCCACGGAACTAATTAA

Function

GO: NA

KEGG:

id description
K09544 HSPB3; heat shock protein beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009997 True 435 mRNA 0.54 1 8977954 8978388

Neighbor

gene id symbol gene type direction distance location
AMCG00009996 ndufs4,LOC107661235,LOC107602025,LOC107599174,LOC107708631 coding upstream 170067 8804010 ~ 8807887 (+)
AMCG00009995 NA coding upstream 201943 8769477 ~ 8776011 (+)
AMCG00009992 NA coding upstream 217926 8724292 ~ 8760028 (+)
AMCG00009993 NA coding upstream 281893 8668875 ~ 8696061 (+)
AMCG00009990 isl1,LOC107661270,LOC107374027,LOC107708623 coding upstream 547321 8404843 ~ 8430633 (+)
AMCG00009999 snx18 coding downstream 2367 8980755 ~ 8997868 (+)
AMCG00009998 NA coding downstream 80088 9058476 ~ 9069701 (+)
AMCG00010003 wdfy3 coding downstream 94853 9073241 ~ 9171648 (+)
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding downstream 199651 9178039 ~ 9204099 (+)
AMCG00010005 NA coding downstream 368638 9347026 ~ 9350311 (+)
G77073 NA non-coding upstream 169347 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 277837 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 539168 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 660279 8314116 ~ 8317675 (+)
G76935 NA non-coding upstream 1083564 7889483 ~ 7894390 (+)
G77126 NA non-coding downstream 225954 9204342 ~ 9205423 (+)
G77125 tmem175,LOC107744870 non-coding downstream 227247 9205635 ~ 9208519 (+)
G77135 NA non-coding downstream 373203 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 438042 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 450855 9429243 ~ 9431629 (+)
AMCG00009959 NA other upstream 1915220 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 2892148 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3208902 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3729773 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4057070 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1324538 10302926 ~ 10313486 (+)
G77423 NA other downstream 2171238 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2311515 11289903 ~ 11389245 (+)
G77541 NA other downstream 2722318 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 6013531 14991919 ~ 15032181 (+)

Expression


Co-expression Network