AMCG00009998


Basic Information

Item Value
gene id AMCG00009998
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9058476 ~ 9069701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009998
GGGTAGCGCTGATATATACACAATCACGATAATGAGACGCAGAATAGGTTTATACTAGTCTAAATTACCCCAGAGCATAGGGCATAGATATGAGAGCAAGCCGGTTTCAGTGCGTACAGTTCTAAAGAAGATAAACCACATAGAAAGGCACAAAAGCTCAGATGTGTGGCCTATGGCAGTGGAGCCCAGTGCGCAGGCGCTACTCTGCTGGCGAGGGTCCAGCTGCCTCCCTGCGCTGCTGTGAACTGGAAGCATTCAAGCTGCCTTCAGAGCAGGCCAGGACACTGCTTAGGTTTACCGGACACATTCCGCTTCAGACAGTTATTCAATGGATGGGTCTGAAATACCACATTTCCATGCCCATAGTAGCTGGGGCATTATTTGTTGGCATCCCCTATAGTGTTTCCCTTGTTGCACAGTGGATATATGGCTGGCCCAATAAACCTGGCTACAGGAAGTATATAGAAGCACTAAAACCCAGGAGAATATATTGTTTAACGGTAGCTGTGCTGGAGATGATGAAGTATCTTCAGTATGGCAAACTGTACTTTCAGTGGAAGTCTTGctataaaaacatttctaattgcAAATGTTGTGAAAAGGGTATAGTTTTTGGCCGCCATGGAAACAAATTGGATTTGTATTATTCCCCAGATGTGGACCAACCCAATAACACTCCATCGCCAGTGGTCATTTTCATATATGGAGGGGCATGGGGTTCTGGAGACAGATCCATATACTGTCTATTGGCACTGCAAATGGCAAAGGAGCTAAAGGCAACTGTTATCTGTCCTGATTATTCAATCTATCCAAAGGGAACTGTTCTGGAGATGATACAAGATATTGCTGACTGTGTTTTATGGGTGAGAGAAAAGGGGCACATGTTTCATGTGGACAAGGCAAGTGATGAAACGGGAAATGTCTTTCTAATTGGACATTCGGCGGGTGCTCATTTATGTGCACTCTCTGCAGTCTTTCTGGCTGGGAGCACTGAGGAACTGGGAATTGAAGCATCCAAACAGAGGGAACTTATATCATCAGTTAAAGGAGTTGTAGGGCTGAGTGGTGTCTATCACATTATGGACCAGTACTTACATGAGATGTGGAGAGGAGTCGAGTTTGTGTCCACAATGCACAAAGCAATGGGTGGAACAGAGCACTTTGATCACTACTCCCCAACACTGTTTGTGAAAGAACTCACAGAGGACCAACTGGAAAGGCTGCCTTCCTTTACCATAGTCCATGGAACGAAGGACTTAATTGTTCCGGTTCAGTCTTCGGTGAGGTTTGCAGATGCCTTAAAATCAGGCTCTGTGAAGGTATCCCTCTACCTCTTGCCCAAGATGGGACACACAGATATGGTTACTGACCTGATGGCACCTGACAGACGATATTACCACACAGTCTTCGGATGCATAAAACAAGAATTCAACAGGCATATTGCATAGTTTTAAGCAGACCTTtatgaattgttttttaatttaaagggcaaaggttgttttttttactttgaagcTATTCTTGAAGTTATGGGTGAAACTTTGAttatatttaagtttaaatgCTTGCTTGAAATTTATAACTAGGATACTTTTTATGtagcaatttcaaaatgttgtacttcaatttacttttttaattgaggGGAACAGTATTAGATTAATCTGAAACAGTATTTTCTGACAGACATATTTAGTGTTCTGTTTATACATTTGCTTATTTGAGCGTTTATCTGTTGGTTTGAGGATGGGTTTCCTAAAAGGTTGTTTTGTAGTTATAAAGGAGATGCCTTTCATCTTCCTGTTCTTGAATTTCAAAGTATCACAAGATTCCTCCCATTAGTGTAGCCATTGTaacttgcattaaaaataaagtgccATTGTCCAGATATAGTTATCTGGATGTAGAATAAAAAGTATTAAGATTTTGGGTAGGTCCTTGTGACTTGACACTGAGCTTtggtatttgatattttatcaaACACAAGACTGATTGAAGGAGATTAAAACAGCCTTAACTCTTCAGCCACTAAAACCCAAACTCATTCCCcgcatctgccaggtgtcagacTTTTTTAATTAGACTGACAGGTATTAGGGACCGACTTGCCAGCTGTGTTAATAAGTGGCTTTCCGTGTAGTCAGAACATATCTGTGGAGTTGTTTGGAAGCAGTGCTAGTGAGGCTCTGGAATACATGGTGTCTTTATGCTAGATTCAGCCAACTCCTAGATTATGGATTATGGGTATTTCCTGTTACAAGTTTTCTaggaaatgtaacattttcaatGGAGTTACTTCACAATGAAGTGTTCCAagctctgtttgtttttctggtcAAGCTTTGTGAACACAGATGTTGTGGAGGTGTAAATGTTGtctctctttttgtgtgtgtgaattaagTCAGTCAGTAGGCATGACTATTATACCTGCAGGTCTGCAGAGACCTTCAATAGAGCAGAGGGTTGTAAGtcataaagaatgaaaatgtgaatagaCTCCATGTGGGTCACTGgatgatgtattcatttgttgcatttgtatttgttggaCGAGTGGATGCCAGGGATCGAATCCTCAGAGAGAGGCTCTTTTAAAAGTCTAATGCATTAATTTGAATGAATTATTATAGGACAATGCAAATCATTCACAGGTGTCATAAACTCCCAAAACAGatgatgtaaaaatgtaaaagtatgaAACGCATTGAATAATGGAGAAACTCGCTAAATAAAAGCACCTGACCAAGCATGAGAAGCCAGCGAAGAGCAGTATTGTAGTGTAGTTGCTCATTAACAGTCAGAATGATCTAAGTGATGGGTATTTAACTTTAAAGTGTCAtctttgaagtgttttttgcaCACCATAGAAATAAAGAAGTTATTAGTAAATTGCTCCATTAGCCTTTCAGAGCTTTGACAGTCCTAGACAATGTAATGCACTTAGCTGATGTATACGTATGGATATTTATCAAAGAATGTGAATGCTGCTAAAAGCATGACTAATGATAGTTTACAATTTGACTTCCAATACACCAGCACACTCTGAAGCCTAATCTAGTTATGAAGGACAAGACTTAAATTATCATTCCGTGTGCTTATACTGTACTTTACATTTCTTGTTTCctattaagatgtttttttttttccattttgttggTTAAATTATGTAAGAAAATAGCATGCCTTTTGATACTGTAGATGTTTGAATTGTCTGCACTCGGATCTTGAAGTCAATTACTACTGGTACTAGTGTGGAAAATTACCTCAAATTTGCACAGTGcacaatgtattgttttaagaaaaaaatatgaaaagtagTAAACTTCTTGCTTTTATCattaactattattaataatccaCTTAAGGAAGGATATTAAGAAGCTGAAATGATTTAGAGCATTTTTTATTCAACAAGACTTATTTGCTTGACAAATGCATAAATctaacctttttaaaaaattaatctgtttgtctttgaaaatgcaaaaagacCTTGAAATAAGTGCTCAGTCTTTTCCTGAATGGAGTTCGAATCACAAACAGATTGGGAGATTAATGCTACTGTGgctgttttaatttgttgaagAATGTGTTTAGAGAACTTGAAGACATTTTGTTGTAAccttaaaaatgtgtatgtttgtcaTTCTTTAGGAAAAAACATAACTTTGTATTTGTGGTTGTCAGGGACAGagaattaaacattaaagttCAGCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K15889 PCME; prenylcysteine alpha-carboxyl methylesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009998 True 3721 mRNA 0.38 8 9058476 9069701

Neighbor

gene id symbol gene type direction distance location
AMCG00009999 snx18 coding upstream 60608 8980755 ~ 8997868 (+)
AMCG00009997 NA coding upstream 80088 8977954 ~ 8978388 (+)
AMCG00009996 ndufs4,LOC107661235,LOC107602025,LOC107599174,LOC107708631 coding upstream 250589 8804010 ~ 8807887 (+)
AMCG00009995 NA coding upstream 282465 8769477 ~ 8776011 (+)
AMCG00009992 NA coding upstream 298448 8724292 ~ 8760028 (+)
AMCG00010003 wdfy3 coding downstream 3540 9073241 ~ 9171648 (+)
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding downstream 108338 9178039 ~ 9204099 (+)
AMCG00010005 NA coding downstream 277325 9347026 ~ 9350311 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding downstream 290415 9360116 ~ 9375744 (+)
AMCG00010006 prkg2,LOC103134980 coding downstream 323180 9392881 ~ 9414133 (+)
G77073 NA non-coding upstream 249869 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 358359 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 619690 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 740801 8314116 ~ 8317675 (+)
G76935 NA non-coding upstream 1164086 7889483 ~ 7894390 (+)
G77126 NA non-coding downstream 134641 9204342 ~ 9205423 (+)
G77125 tmem175,LOC107744870 non-coding downstream 135934 9205635 ~ 9208519 (+)
G77135 NA non-coding downstream 281890 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 346729 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 359542 9429243 ~ 9431629 (+)
AMCG00009959 NA other upstream 1995742 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 2972670 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3289424 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3810295 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4137592 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1233225 10302926 ~ 10313486 (+)
G77423 NA other downstream 2079925 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2220202 11289903 ~ 11389245 (+)
G77541 NA other downstream 2631005 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5922218 14991919 ~ 15032181 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031298 si:dkey-193c22.1 coding NC_007116.7 CM002889.2 40200818 ~ 40210447 (-)