AMCG00009999 (snx18)


Basic Information

Item Value
gene id AMCG00009999
gene name snx18
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8980755 ~ 8997868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009999
ATGGCGCTGAGGGCGAGGGCTTTGTACGACTTCAATGCGGAGAACCCAGGGGAGATTTCGGTCCAGGAAAACGAGATCGTCACCTTGTACAGCCAGAATGATATCGAGGGGTGGCTGGAGGGGATGAACggcagaggggagagggggctcTTCCCAGCATCCTACGTGGAGATCCTGAAGAGCGACGCAGCCCCTTcccacaacagcaacagcagcagcggcagcacAGCTGGAGACGGATACCCGGCCTCAAGGTATGCCAACGTGCCCACCGGGGGCTACGACACCGGCTACAAAAGCCAGGCGCCGCTGGAGAACTTGGCGCACACCGCGGCGCCAGCCTTCGCCGCCTTCCCCGCAGCCCctccgcagcagcagcagcagcagcagcagcactacCAAGCCAGCCAGGGCAGCGACGACGACTGGGACGACGACTGGGATGACAGCTCGACGGTGGCGGACGAGCCCGGCGTGGTCGGTGGGCACTTCCAGGACTACGATGGCACCGGCCCCTCGACGTACAGGTTGTCCACCGCCTCGTCGCTGTCGAGGGGCGGCACCAACGCGCAGCAGCCCAAGAGCTCGGCCACGGTCAGCCGCAACCTCAACAGGTTCTCCACCTTCGTGAAGTCCGGCGGCGAGGCTTTCGTCCTGGGGGAGGCGTCTGGCTTTGTGAAAGACGGGGACAAGATCTGCGTGGTGATGGGTCAGTACGGGCCCGAGTGGCAGGAGAACCCCTACCCCTTCTCCTGTACCATCGACGACCCCACCAAGCAGACCAAATTCAAAGGCATGAAGAGCTACATCTCGTACAAGCTGACGCCCACCCACACGCAGAGCCAAGTCAACCGGCGGTACAAGCACTTCGACTGGCTGTACGCCCGGCTGGTGGAGAAGTTCCCCGTCATCTCGGTGCCCCACATCCCCGAGAAGCAGGCCACGGGCAGGTTCGAGGAGGACTTCATCTCCAAGCGCAGGAAAGGCCTGATCTGGTGGATGAACCACATGACCAGCCACCCGGTGCTGGCCAGGTGCGACGTCTTCCAGCACTTTCTGTCGTGCAGCAGCACCGACGAGAAGGCCTGGAAGCAGGGCAAGAGGAAGGCGGAGAAGGACGAGATGGTGGGGGCCAACTTCTTCCTCGCCATCAGCACCCCGGCGGCGCCCCTCGACCTGCAGGAGGTGGAGAGCAAGATCGACGGCTTCAAGGCCTTCACCAAGAAGATGGACGACGGCGTGCTGCAGCTCAACGCCACCGCCAACGAGTTCGCTAGGAAGCAGATCACGGGTTTCAAGAAAGAGTACCAGAAAGTTGGCCAGTCGTTTAAAACCCTCAGCCAGGCCTTCGAGCTGGACCAGCAGGCTTACTCCACCGCTCTGAACCACGCCATTGCCTATACCGGCGAGGCGTATGACGTCATTGGGGAGTATTTTGCAGAACAGCCCAAACAGGACCTTGACCCAGTGATGGACTTGTTAGCGCTCTACCAGGGGCATCTGGCCAACTATCCAGACATCATCCATGTTCAGAAAGGAGCCCTGACCAAAGTGAAGGAGAGCCAGAAGCACGTAGAGGAGGGCAAGATGGAGTCCCAGCACGCCGAGGGCATTAATGAACGCTGCAACATCATCTCCTTTGCCACGCTGGCGGAGATCCAGCACTTCCATCAGATCCGCGTGCGGGACTTCAAGGCCCAGATGCAGCACTTCCTACAGCAGCAGATATCTTTCTTCCAGAAGGTAACACACAAGCTGGAGGATGCCCTTCAGAAATACGACAACGCCTAA

Function

symbol description
snx18 Enables phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including cytoskeleton-dependent cytokinesis; endosomal transport; and positive regulation of GTPase activity. Located in cytoplasmic vesicle and extracellular exosome. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with clathrin-coated vesicle.

NR:

description
PREDICTED: sorting nexin-18

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0007154 cell communication biological_process
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009999 True 1791 mRNA 0.61 2 8980755 8997868

Neighbor

gene id symbol gene type direction distance location
AMCG00009997 NA coding upstream 2367 8977954 ~ 8978388 (+)
AMCG00009996 ndufs4,LOC107661235,LOC107602025,LOC107599174,LOC107708631 coding upstream 172868 8804010 ~ 8807887 (+)
AMCG00009995 NA coding upstream 204744 8769477 ~ 8776011 (+)
AMCG00009992 NA coding upstream 220727 8724292 ~ 8760028 (+)
AMCG00009993 NA coding upstream 284694 8668875 ~ 8696061 (+)
AMCG00009998 NA coding downstream 60608 9058476 ~ 9069701 (+)
AMCG00010003 wdfy3 coding downstream 75373 9073241 ~ 9171648 (+)
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding downstream 180171 9178039 ~ 9204099 (+)
AMCG00010005 NA coding downstream 349158 9347026 ~ 9350311 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding downstream 362248 9360116 ~ 9375744 (+)
G77073 NA non-coding upstream 172148 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 280638 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 541969 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 663080 8314116 ~ 8317675 (+)
G76935 NA non-coding upstream 1086365 7889483 ~ 7894390 (+)
G77126 NA non-coding downstream 206474 9204342 ~ 9205423 (+)
G77125 tmem175,LOC107744870 non-coding downstream 207767 9205635 ~ 9208519 (+)
G77135 NA non-coding downstream 353723 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 418562 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 431375 9429243 ~ 9431629 (+)
AMCG00009959 NA other upstream 1918021 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 2894949 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3211703 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3732574 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4059871 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1305058 10302926 ~ 10313486 (+)
G77423 NA other downstream 2151758 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2292035 11289903 ~ 11389245 (+)
G77541 NA other downstream 2702838 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5994051 14991919 ~ 15032181 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_05985483_05986985 SNX18B, SNX18 coding CI01000304 null 5985386 ~ 5987571 (-)