AMCG00010002 (cds1,LOC107602031,LOC107744867,LOC107663388)


Basic Information

Item Value
gene id AMCG00010002
gene name cds1,LOC107602031,LOC107744867,LOC107663388
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9178039 ~ 9204099 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010002
ATGACAGAGCTGAGgaagaggggaggaggaggaggaggaggcggcgggGACCCTGACAGCACAGAAAACATCAGCGACAAGGCAAAAGGTCTAGATGCATTCTCCTCTTGTGTTCGACAGGAGACAGATGGAGAGGACAGAATTGGGCTGACTGGAGAAGGAGACCGAGACTCCAAACCAGACACAGATACTCCAGAAGTACCTCCTCCTGGAGAAAGGACTCCCAAATGTCTAAACAAAGCCCTGGGGGGGCTCTCTTCAAGATGGAAGAACTGGTGGATTCGAGGGATTTTAACATTAACAATGATTACTGGCTTTTTTCTAATCATCTCCTTAGGGCCTTTCATGCTAATACTAGTTgtcaTGGGCATTCAGATCAAGTGTTTTCAGGAAATAATAACTATTGGGTACAGAGTTTATCACTCATACGACCTTCCGTGGTTCAGGACATTAAGCTGGTATTTTCTGATTTGTGTGAATTACTTCTTCTACGGGGAAACTGTGGCAGACTACTTTGGTGCTCTGGTTCAAAGAGAGGAGCCCCTGCAATTTCTGGTTCGATATCACCGCTTCATTTCCTTTGCCCTTTACTTGGCAGGTTTCTGCATGTTTGTACTGAGTTTAGTGAAGAAACATTACCGCCTGCAGTTTTACATGTTTGCATGGACACATGTGACACTGTTGATTGTGGTCACACAGTCACACCTTGTCATTCAAAACCTGTTTGAAGGAATGATCTGgTTTATTGTTCCAATATCTATTGTGATCTGCAATGACATAATGGCTTACCTGTTTGGTTTCTTCTTTGGACGAACACCTTTAATTAAGCTGTCTCCAAAGAAGACCTGGGAAGGCTTCATCGGAGGGTTCTTCTCCACCGTTGTGTTTGGATACATATTTGCGTACCTTTTGGCTCAGTACAAATACTTTGTGTGCCCTGTGGAGTATAACAGCGAGACTAACAGTTTTGCTGTAGAGTGTGACCCCTCAGAGCTGTTTGTGATGCAGGAGTACACCCTTCCCTCAGTAATGCAGACTGTCCTGAGATTGAAAACCATGAATCTGTACCCCTTTCAGATCCACAGCATCGCACTTTCCACTTTTGCATCACTGATAGGACCATTCGGTGGTTTCTTTGCCAGTGGATTCAAAAGagcttttaaaatcaaaGATTTTGCAGACACCATCCCCGGACACGGGGGCATTGTGGATCGCTTTGATTGTCAGTACCTGATGGCCACCTTTGTTCATGTGTACATTACCAGCTTTATCAGGGGACCCAACCCCAGTAAAGTGTTACAGCAACTACTGGTCCTCCAACCTGAACAGCAGCTGAGCATCTTCAACACACTGAAATATCACCTGAAGGAGAGGGGCATGATTCCCAAAGCAGTTGAAGGACAGTAAAGACTGACAATACTTTCTGCTTCTCCAACATCACAATAAACAAACCCTGCTAAAGCAGAAATCTCCTCCGGTAGCTGCAGAGCATTGAAGGCCAGGATTTTCAGAAGAATGCTTATCCTTGTGTCATCACCACGAAACATGACTACATTATACATCATGAGGTATCCTGATAACATGATCAGCCATCGTGCTGCCTTGGGTATTGCATGACTACATGAGGACTGGTTCACCTGCAGAAGGAAAGCGATTTAACAAGCTTTGCAACTctgaagattttaaaatgtcttcctAAGAACGATGTAAGCACACAGTCACTGAATGTATGGTTTGAATATAGAGGTTATTTTGTGAAGCTGCTTTCATTATCAAATATTGCACTGAACCTAATTTAAGTAGGGGAAGGTACAACATTTTAGTAGTAGTGCCCTCTGCAGaacttaataatataattatatttagatGTGAATATCTGGTTAAGAAGCTTGGATATTTTACTGTTCTGTTCTCCTGGGATACCTTGACCAACAGTAGATAACAATGATCCAGATAtcaagattttatatttttctctgtaaGTAGAATATGATTTTTAGATTACTGTGGTCTTAATGTTGAAAATTGAGCGTAAAAGCATCAAAATATAGGTAAGTACTTTTAGTACTGTTATGGCTGCTTAAAGAGATAATACTTAACCTCTTCCCTTCTCCATCACAActataaaatgtacagtgaggCGATGCTGTTAGACTAGCGCAGAAGCCGTCTCCACACGCTGCAGGTGACCAGTTGAAGTTGTCTGCAGCAGGCATGGCAGTAGATACTGTAGATTCAAATTAATATAGTACTGGCTATTGTatacgagtgtgtgtgtgtgtgtgtgtatatatctatatatctatatatatatagatatatacacacacacacacaattataataaGTATGTGAGTTGGCTAATAAATTATAGGACATGGAAAAATGTTATGCAAAAAAGGTGaatgggatttattttattttatagtttgtatAGCATGGATAAAATCCATTTAGTTGAAATGTTGGAAGGATTATATATGCACAAATAGTTGTCTGGTTACTGGAGCATGGCAACTCATAGGACTGTATAGGGTTGCTCATATGGAAATTGAATGATGTTCGTTTACTTTCCAGTaaaccaaatatttaaattgcactttaattAAGTGTATTAATTATTGCTTTTACCATACTTGGAATCCCTCCAGAGATAATAGTGTTTGCCAGCCAGCTTCCAACACTAATCTTGTATGTTCATATatcttttccctctctctgaacggaaaagtgttttacattacagtgtttaaaaaaagaataatcctTTGATGCTTTTAAAAGAATGAGGGATTTCCATTAGATATTACAATCGTGTaacttgtaaatgtatttaagttcTGTTAGAAAGAGAACTGGGATCCTTTGGCAACCTATTACTCATGTGCTGGAGcaacaacagaaacatttgTCTTTAAACTGACAAGCAGGATCACATTCTGCAGTGACAGATAGTTAATTTACCAAAGTGCTGTCTGTTTTAAGTCTGATTTTCTCATGTATCTTTAACAGAGATATAAATGATTTGAACAAAACTAATTCTCAACAGATGTTACCCAGAAGGCTTCAGATCTCACCAGCAGTCTCCCAATATTGAATGTACAATTGAAagagtgttgtttttgttagaaGCAACTCTTACTTAAGTGTACATTAGTTCATATAAACTAATGAAAATGTGATTACTCTTGTTTTGAGGAAATGGTCATATACTATGTCAAATTATGCAAGGACAGAGCTACATAACAGGACAGAGCTACATATTTGCAAGTTTCTTTTTACAGAAGGAGACGTGTGGGCAAGAAATCTTTAACATGGGCTATTTTGGTTGAATTGAAAAGTCTAAATTGTTTgtcttagaaaacaaaacaaaaaagcaaaaaggaaGTATTGGCTGTAGTTCCTGGTTGCGCAGCTGATTAGATAAttctttgttaaatataaaaaatgtaataagttgaattgtattaatgttttatagagGTTTAAGTGCATGTCTTTCCAAAGAGAAAATAGAATTGGTGGATTTTGGGACCAGAAaagctgtatttatatttttgaggCATACAAACGTAATCATTCAAAGGCTTCCaccaaaatatttattcacaggtgtacaaaaatatatacatttctctctctctctctctctctctctttttccccaATACCTTTGGTTTACATATTCATTAATCAAGCTATATTTTCTTAGCGAGCATTTGTGCTATGAACAGTCTAAAAGACTAACATTGTACTTGAAAGTGTGAGAAgtgcaatttaacattttatattttactttattttatttatttgttgtacatTAGTAGGTGGTTCAGAATAGCTAGGGTGTGAGTGGGTGAGAATAAGAGTTTAAATTGCACTGTAGTgaaaaaatgaacatgaaaatgtatgttctttCTAATTTATGTgactttacattttatactaTCTTGTGAGATTAGGTACCAGGTTGGCAAAATGAAAGGCTTACTACAGTGATTGGAGTGCTcctttattaataaaacatgttgattCGCCTCTAGATTTTcctctttcaaaatgaaaaaatacattctaaaccATGGATTTACCCTGAAGGTCATGGCTTGAGTAGATGATGAAGAATGATTTAAGCTATTTGAGTATGACATTGATCAACACTTCCGTAGAACTGCACAGATAAAAGAATGTAGTTAAATGTCAGTCACAGTTGGTCAGAAATAAAACGCTGAGATCTGAAGTGATGAGATTAGTCATTACGCTCTGGAATGGGTCATCACAATGCTAAACGAGAGTAAGAGGCCATTTGCCCCGTGCTACGAGCAATTCTAAGCATAGTGTTGCATAATATCATTTCAGTGTTTAcaattgatcatttattttatctagGAAATCTGATTTCAGCATGCTTCCTTAATAATGATGGATTGTCATCCAGGTGTTTTGCCGGCAGTAAACTTAAGCCTGGAAGTCAATATTTCTTGTCCTTTTCTTAACTCTAGTCTACCAGTGACAAAAAGCTGAAAGGCTATTAAACCATAGCTAACTAGAAGCGATCTCTGTCAAGTTTAAACAGACCCTGCACTTTGTTATTGAGAGCTCCAGTGGTATAAATCTCTATTGGGAGATTGTTAGTTGTTAAATAGATAACAATTTACACTGTGCAGTGGAGTAAATACTCACTAATTCTGATGCTAACTCCGTCTCTTGCTTTTCCGTCTCCAGGAGAGCAGATTGGCAATTTCTAACGGTTTCTGTGCAGTGGAAAGTCAGCCTCAATAGTAAGAGCTTTCTCGCAAAAATGTCTCCCTCAAAACAGCATAGCCAGTAGTTTACCTAACGATGCCTTTCACGGTTTCCTGCCTGCCGGAAGAACCAAAAAACGACAAAGAACAAGTTTAAATGATTGCTTGAAGTTCTGACTAAAGAAGCATAGttgttattttatcttttacttatgatatatatatttttttcattgtggtggtgatattttttttaatgtactttttatttatttgacaaattaaaggagagATTGCTAAAATACAACTGTTCctcttttcttaaaatattagatacatggtaaaatatataaatgctaatttctttaaaaaatatgatggTTATGATTCAGATATCATAATTATTCACGTCTCCGATGCGTCTCTCTCCCCTGACCTTGGTAACCAGATTTAATAACCGCTCCCATGTGACCTGAGAGGAGAAGCACAGCAGCTGCACACGACACTCCCTGACGTCTCTGTTAAGAGCAGGAAATGTGTAGAATGCAGAGCTAGTTTAGAGGTACGTTTCCATTACAATTTCAGTTTGGTtctcattatttaaatgatcttCCAGGGCAGTATAGCTTTTAGTGGATTGTTGATCTTGTTTCTCCATGTTGTTTTAACGAGACAGATAGCTGTACATGGATGTTCTTTAATCACATCCTTCCTCTGGGTCTGATTGGAGGTCCACTATTGAATCCCACCCTTCCTTCCAGCTATCGAGTGGCTCACACAAAAAGATCCATCTATCACTGGATCTTAACTCTGAAACGTGCTCATCGAGTCTAAATGAACATGAAGTTTAGGGCTTGTGGGCTGATCAAGCCAAGCGTTTTAATGTCCTGTGGTTAGACAAACTGTCACACTGCATTTCACCATATGCCTTGTGTACTTTTCTCCCTCCCCATGCAGCCCCAGTGAAGGTGAATATTTGTCACGAATACCTTGCTGATAGCCTCAAGGAAGTGAAAAGGGCATCCATTACACTACAGATTTGCATATTAACTTATTACACATTTTGTCTAGCAATAAGAATGTACAAATACTGGCATCCAAGACGGTCATTATACATTACATATCGTAACCTATAATTCCATACAGCATAATCAAAAGTGCTCCTTCAGTGAATTAGAGTGGAGAAGACCAGCTTCTTAAAACAGTACTCTAGCCTACACAAATAACCCCTTTTATGGCTTATGGTGAACCCAATttact

Function

symbol description
cds1 Predicted to enable phosphatidate cytidylyltransferase activity. Acts upstream of or within angiogenesis and positive regulation of ERK1 and ERK2 cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human CDS1 (CDP-diacylglycerol synthase 1).

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 1

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010002 True 6005 mRNA 0.38 13 9178039 9204099

Neighbor

gene id symbol gene type direction distance location
AMCG00010003 wdfy3 coding upstream 6391 9073241 ~ 9171648 (+)
AMCG00009998 NA coding upstream 108338 9058476 ~ 9069701 (+)
AMCG00009999 snx18 coding upstream 180171 8980755 ~ 8997868 (+)
AMCG00009997 NA coding upstream 199651 8977954 ~ 8978388 (+)
AMCG00009996 ndufs4,LOC107661235,LOC107602025,LOC107599174,LOC107708631 coding upstream 370152 8804010 ~ 8807887 (+)
AMCG00010005 NA coding downstream 142927 9347026 ~ 9350311 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding downstream 156017 9360116 ~ 9375744 (+)
AMCG00010006 prkg2,LOC103134980 coding downstream 188782 9392881 ~ 9414133 (+)
AMCG00010012 NA coding downstream 468122 9672221 ~ 9688099 (+)
AMCG00010013 antxr2 coding downstream 486474 9690573 ~ 9713280 (+)
G77073 NA non-coding upstream 369432 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 477922 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 739253 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 860364 8314116 ~ 8317675 (+)
G76935 NA non-coding upstream 1283649 7889483 ~ 7894390 (+)
G77126 NA non-coding downstream 243 9204342 ~ 9205423 (+)
G77125 tmem175,LOC107744870 non-coding downstream 1536 9205635 ~ 9208519 (+)
G77135 NA non-coding downstream 147492 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 212331 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 225144 9429243 ~ 9431629 (+)
AMCG00009959 NA other upstream 2115305 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3092233 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3408987 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3929858 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4257155 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1098827 10302926 ~ 10313486 (+)
G77423 NA other downstream 1945527 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2085804 11289903 ~ 11389245 (+)
G77541 NA other downstream 2496607 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5787820 14991919 ~ 15032181 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031296 cds1 coding NC_007116.7 CM002889.2 40009958 ~ 40040488 (-)
grasscarp (Ctenopharyngodon idella) CI01000039_05551786_05560823 CDS1 coding CI01000039 null 5551786 ~ 5562130 (+)