AMCG00010005


Basic Information

Item Value
gene id AMCG00010005
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9347026 ~ 9350311 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010005
ATGAAATGCAGATGTGCGTGTATGAGATTAAACTGGCAGGTTTTAATGAATGGTTGGGGAGAACATTTGCGGGCTACATTGTTGCCACCGCCGGTGACGTCGCACGCCGCGTTCAACCCGGAAGCGAAGGACCTAAACAGAGGCGGCACGTTTTTCAATGCAGGATGAATCTTGCAGGGATTAATTCGTTAAACTCGGTTTCAACTTCATCCAAAAGAAAGAGAGTGACTGAACGCGCAGTCAACTGGTCAGAGGAAGAGACGCGGTCCTTAATACGTGCCTGGAGTGAGGATAGTGTTCAGCGCAGTCTCTCAGAGAGCTTACGCAACACGCATGTTTTCAAGCATCTCTCGGCCCGCATGACAGAACTGGGCTTTGCCAGAAGTCCCCATCAGTGCAGGCTGAGGGTGAAGACACTCAAAGCCAATTATGTGAAGGCTAAGTGCCAAAGCCACGTCGATGGGAAACACCCCATCAGTTTCCGGTATTATGCTGAAATGGACGCAGTGTTAGGAGGGTGTCCTGCAAACAGCCCGCTGTATCACATCAAATACGAAATCAAAAGGGAGGAGGAAAATGGTGCATCCACTGATGAGTTCGAGTTCAGTAACACCAGCTTCTCTCAGAATGAATCTGGGGACAGTCCAATGCATTCTGTGGAGCCACCCAATGCTGCACTTCCACCAACCGAGTCCCGGCAGTTCATGATGCAGCTGGAGACCCAGAGGCACGAGCAGGCCCGCTGGCAGCAGGAGCTGCAGAGGCGGTGGCTGGAGCATGAGGAGCGGCGGCAGCATGAGACGGCCGAGCGGGAGGCACGCATGGAGAAGGCCCGCATGGAGCACGAGCTCCGGGTCCTGCAGCTACTCACCAGCACTCGCCACAGTGACCCCTGCCAGTGCAGCCGGCGCTCCAGCACACCCCAGCTTCCGCACCCTTGA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010005 True 941 mRNA 0.55 3 9347026 9350311

Neighbor

gene id symbol gene type direction distance location
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding upstream 142927 9178039 ~ 9204099 (+)
AMCG00010003 wdfy3 coding upstream 175378 9073241 ~ 9171648 (+)
AMCG00009998 NA coding upstream 277325 9058476 ~ 9069701 (+)
AMCG00009999 snx18 coding upstream 349158 8980755 ~ 8997868 (+)
AMCG00009997 NA coding upstream 368638 8977954 ~ 8978388 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding downstream 9805 9360116 ~ 9375744 (+)
AMCG00010006 prkg2,LOC103134980 coding downstream 42570 9392881 ~ 9414133 (+)
AMCG00010012 NA coding downstream 321910 9672221 ~ 9688099 (+)
AMCG00010013 antxr2 coding downstream 340262 9690573 ~ 9713280 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding downstream 563731 9914042 ~ 9919171 (+)
G77125 tmem175,LOC107744870 non-coding upstream 138507 9205635 ~ 9208519 (+)
G77126 NA non-coding upstream 141603 9204342 ~ 9205423 (+)
G77073 NA non-coding upstream 538419 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 646909 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 908240 8438507 ~ 8438786 (+)
G77135 NA non-coding downstream 1280 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 66119 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 78932 9429243 ~ 9431629 (+)
G77201 NA non-coding downstream 167347 9517658 ~ 9518012 (+)
G77207 NA non-coding downstream 210998 9561309 ~ 9561806 (+)
AMCG00009959 NA other upstream 2284292 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3261220 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3577974 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 4098845 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4426142 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 952615 10302926 ~ 10313486 (+)
G77423 NA other downstream 1799315 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 1939592 11289903 ~ 11389245 (+)
G77541 NA other downstream 2350395 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5641608 14991919 ~ 15032181 (+)

Expression


Co-expression Network