AMCG00010007 (rasgef1b,rasgef1ba,LOC107663389)


Basic Information

Item Value
gene id AMCG00010007
gene name rasgef1b,rasgef1ba,LOC107663389
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9360116 ~ 9375744 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010007
GAAAATATGCCACAAACGCCACCTTTTGCGACCATGTTCACCACCAGTGGATATAATAGGAATCTCTACCAGACCAAGGAGGACAGCTATGGGGGCCTGTATTATCATGACAACAACCTTGTGTCAGGGTCTCTGGAGTCCCTTATCCAGCATTTAGTCCCCAATGTGGAGTACTATCCTGATAGAACGTATATATTTACTTTCCTGCTCAGCTCTCGGCTCTTTATCCACCCCTACGAGCTCATGGCCAAGGTGTGCCACTTCTGTGTTGAACAGCAGAGACTAAGCGACCCCGGGGCTGACAAGATCAGAATAAGGAAAATCGCCCCCAAGATCCTGCAGTTGCTGACAGAATGGACGGAAACCTTTCCCTATGACTTCAGAGATGAAAGAATGATGAGAAGTCTGAAGGAACTGACCCACAGATTCGCGAGTGGAGATGAGATTTACCGTAAGACTGTGCAGCAGATGATGCAGTCTCTCATCAGGAAGCTGGCCAGCCTAAGCCAATATGAAGAAGTGCTGGTGAAAATAAACGCTACGGTCACAGATAGGCTGACGGTGCTCAAGACCAAACCTCAGTCCATACAGAGGGACATTGTGACGATATGCAGTGACCCCTACACCTTAGCACAGCAGCTCACCCACATAGAGTTGGAGCGACTGAGTTATATAGGCCCTGAAGAATTTGTACAAGCGTTTGTGCAAAAAGACCCCCTGGACAATGACAAGagctGCTTCAGTGATCACAAGAAAACCAGCAACCTGGAAGCGTACGTCGAGTGGTTTAACAGGCTCAGCTATCTTGTTGCAACAGAAATCTGTATGCCCGTGAAGAAGAAGCACAGAGCCAGAGTCATCGAGTATTTCATCGATGTTGCTCGAGAATGTTTCAATATTGGCAACTTCAACTCTCTGATGGCCATTATATCTGGCATGAACATGAGTCCTGTCTCCCGGCTGAAGAAAACCTGGGGCAAAGTAAAGACGGCCAAGTTTGATATTCTCGAGCATCAAATGGATCCATCAAGTAATTTCTACAATTACCGGACTGCACTGCGCGGGGCGACGCAGAGGTCCTTAACAGCTCACAGCAGTAGAGAGAAGATTGTTATACCATTCTTCAGTTTATTAATCAAGGACATTTACTTCTTAAATGAGGGCTGTGCTAACCGACTCTCCAATGGACATGTCAATTTTGAAaaattctGGGAACTGGCCAAGCAGGTGAGCGAGTTCATGACATGGAAGCAGGTGGAGTGTCCCTTCGAGAGGGACCGCAAGATCCTCCAGTACCTCCTCACAGCGCCAGTCTTCAGTGAAGATGCGCTCTACTTGGCCTCTTACGAGAGTGAGGGTCCCGAGAACCACACCGAAAAGGACAGATGGAAGACTCTT

Function

symbol description
rasgef1ba Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in several structures, including axis; forerunner cell group; germ ring; mesoderm; and nervous system. Orthologous to human RASGEF1B (RasGEF domain family member 1B).
rasgef1b Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction. Predicted to be located in early endosome; late endosome; and midbody.

NR:

description
PREDICTED: ras-GEF domain-containing family member 1B

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010007 True 1398 mRNA 0.48 12 9360116 9375744

Neighbor

gene id symbol gene type direction distance location
AMCG00010005 NA coding upstream 9805 9347026 ~ 9350311 (+)
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding upstream 156017 9178039 ~ 9204099 (+)
AMCG00010003 wdfy3 coding upstream 188468 9073241 ~ 9171648 (+)
AMCG00009998 NA coding upstream 290415 9058476 ~ 9069701 (+)
AMCG00009999 snx18 coding upstream 362248 8980755 ~ 8997868 (+)
AMCG00010006 prkg2,LOC103134980 coding downstream 17137 9392881 ~ 9414133 (+)
AMCG00010012 NA coding downstream 296477 9672221 ~ 9688099 (+)
AMCG00010013 antxr2 coding downstream 314829 9690573 ~ 9713280 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding downstream 538298 9914042 ~ 9919171 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding downstream 769809 10145553 ~ 10154362 (+)
G77135 NA non-coding upstream 8246 9351591 ~ 9351870 (+)
G77125 tmem175,LOC107744870 non-coding upstream 151597 9205635 ~ 9208519 (+)
G77126 NA non-coding upstream 154693 9204342 ~ 9205423 (+)
G77073 NA non-coding upstream 551509 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 659999 8697678 ~ 8700117 (+)
G77192 NA non-coding downstream 40686 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 53499 9429243 ~ 9431629 (+)
G77201 NA non-coding downstream 141914 9517658 ~ 9518012 (+)
G77207 NA non-coding downstream 185565 9561309 ~ 9561806 (+)
G77233 NA non-coding downstream 366045 9741789 ~ 9743100 (+)
AMCG00009959 NA other upstream 2297382 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3274310 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3591064 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 4111935 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4439232 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 927182 10302926 ~ 10313486 (+)
G77423 NA other downstream 1773882 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 1914159 11289903 ~ 11389245 (+)
G77541 NA other downstream 2324962 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5616175 14991919 ~ 15032181 (+)

Expression


Co-expression Network