AMCG00010020


Basic Information

Item Value
gene id AMCG00010020
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10291974 ~ 10299643 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010020
ATGGAAAAGACTCCACTTCCTGGACCTAACGATATCGTAATGACCACACCACCCAACACCTACCAACAAGAGCCCGTCACCCCGCCTAGAGGCAACTCCTCCTCTCTGAAGCCCAACCAGGTCGGCCAGGTCGTGCTGTACGGGGTTCCCATCGTCTCCCTGGTGATCGACGGCCAGGAGAGGCTGTGCCTGGCGCAGATATCCAACACCCTGCTGAAGAACTACAGTTACAATGAAATCCACAACCGACGGGTAGCCCTGGGCATCACTTGTGTGCAGTGCACCCCTGTGCAGCTGGAGATCCTGCGGCGGGCCGGGGCCATGCCCATATCTTCCAGAAGGTGTGGCATGATCACCAAAAGGGAAGCCGAAAGACTCTGCAAGTCCTTCCTTGGGGAGAACTCGCCTCCTAAGCTTCCCGACaactttgcttttgatgtgACACATGAATGTGCATGGGGCTGCAGGGGGAACTTTGTCCCAGCCCGTTACAACAGCTCCAGAGCGAAATGCATTAAATGCTGCTACTGTAACATGTACTTTTCCCCCAACAAGTTCATTTTCCATTCCCACCGCACCCCAGAGGCAAAGTACACCCAGCCCGATGCTGCCAATTTCAACTCTTGGCGGCGCCACCTCAAACTCACTGATAAAACCCCACCAGATGACCTAGCCTTCGCGTGGGAGGACGTGAAAGCCATGTTCAACGGGGGGAGTCGCAAAAGAGCCCTTCCACAGGGTCACTGCTCCTCTCTGGGGCAGGTCAAGGCAGTTAACACTGTTCTCCCGCACATGATCTCCCCAGACCTGACCCAGAAGAGAGCGAGATTCGAGGAGGACGAAGACGTTGATGGAACGAGCTTGTCCCCCCGGAAGAATCCGCGCAGCTACCCTGTCATTCCAGTACCAAGCAAGAGCTTCGGCATGTTGCAGAAATTCCCCGCTACCTCGCTGTTCCCTAACCCATACACTTTCCCGGCTTTCAGCCTGTGTCAAAAAAAGGAGGACGGTGAGCCGGCAAATGGACAAAAAACAAGTGGACTTTCTGGCCTCCTTTGGCCAGGTAGAAAAGATGCTTTCTACCCTCCCTTTTGCATGTTCTGGCCTCCAAGGACAACAGGCGGCATCCCGGTACCCACCTACCTCCAGCCTCAGCCCAATGCCCTCACCTCGCTCACGGAAAACCCAACGCTGCGACAAGCCTTCCTTGACCTTTCGGAGCAGAGCGAGAGCAGCGCCTTGGCCAATCCCAGGGCAGGGCTGTTTGACAGTGACTGTACATCGGCGACCAACGATCTCAGGCCGGCCCAAGACGCGCGGCTCAAAATTATGGAAGCGCCTTCGTTCCCGACCAGGAAGGCCAGCTACCATTCTGCATTCCGACCTGTGGTGAAAGACGCCGAGAGCATCGCCAAGCTGCATGGAAACATGGAGGAATTCGGCTCTGATCGGCACCTTTCTCCAGGGACCAGCTGCAGTTACCAAAGCGAGAGTGGCGACAGCGATGAGGAGCAGGAGGTCGACGTAGAAACCAAACAAGACGAGGAAGAGGAAGACTTCAGCGCCAGGCAATGCGTCCAGCTCAGGGGGCTCACAGAAAACACGGAGCAGAGGAATAAAGACAGGGTGCATTTCCCCAGTATGGGCACGGATTCCACGGAGGAAAAAAACGGCCTCTCAGCCAGTTCACCTGCCAGTCTAAAAGACTCCAGCCCGATTCACGCCTCACTGGAGGAGTCAAACTACAAAGATGGACACAAAAACAGAGGTGACGGACAGACAGCTTTTGCTACCAAAGAAAATATCAGCCTTTCAGacGAAAACAAAGAACAGAGCAACTTCTTTGTTTCCGAAACGGACACATCTGGTCCTGAGTACTGGAGAGAGACTGCAGGTGATCAGAGCCAAGAACCAAACCCACCTGCAACTCTAAAGAAGGATGTGGAAAATATGGAAAAAGAAGAACTCCAGAAAGTGCTGTTAGAACAGATCGATTTGCGAAGACGGTTGGAACAGGAGTTTCACGCGCTTAAGGGCAATTCTACATTTCCAGTGTTCCATAACTTCCAAGACCAAATGAAGAGAGAGCTGGCATACAGAGAGGAGATGGTCCAGCAGCTGCAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010020 True 2127 mRNA 0.54 6 10291974 10299643

Neighbor

gene id symbol gene type direction distance location
AMCG00010017 smad2,LOC107743055,LOC108235010 coding upstream 137612 10145553 ~ 10154362 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding upstream 372803 9914042 ~ 9919171 (+)
AMCG00010013 antxr2 coding upstream 578694 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 603875 9672221 ~ 9688099 (+)
AMCG00010006 prkg2,LOC103134980 coding upstream 877841 9392881 ~ 9414133 (+)
AMCG00010025 NA coding downstream 33577 10333220 ~ 10359574 (+)
AMCG00010027 NA coding downstream 112063 10411706 ~ 10412110 (+)
AMCG00010026 NA coding downstream 454149 10753792 ~ 10754548 (+)
AMCG00010024 cntfr,LOC106572571 coding downstream 494289 10793932 ~ 10798679 (+)
AMCG00010028 NA coding downstream 594566 10894209 ~ 10909942 (+)
G77285 fras1 non-coding upstream 294089 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 351539 9874868 ~ 9940435 (+)
G77255 NA non-coding upstream 365864 9922721 ~ 9926110 (+)
G77233 NA non-coding upstream 548874 9741789 ~ 9743100 (+)
G77207 NA non-coding upstream 730168 9561309 ~ 9561806 (+)
G77346 NA non-coding downstream 15703 10315346 ~ 10316098 (+)
G77349 sigmar1,LOC107573076 non-coding downstream 31077 10330720 ~ 10332498 (+)
G77395 NA non-coding downstream 678020 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 1055448 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 1285311 11584954 ~ 11586100 (+)
AMCG00009959 NA other upstream 3229240 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4206168 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 4522922 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5043793 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 5371090 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 3283 10302926 ~ 10313486 (+)
G77423 NA other downstream 849983 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 990260 11289903 ~ 11389245 (+)
G77541 NA other downstream 1401063 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4692276 14991919 ~ 15032181 (+)

Expression


Co-expression Network