AMCG00010024 (cntfr,LOC106572571)


Basic Information

Item Value
gene id AMCG00010024
gene name cntfr,LOC106572571
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10793932 ~ 10798679 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010024
CCTCCAAAGGATCCCACCGTGACATGTCGATCAAACACTTATCCCAAGGGATTCTATTGTAGCTGGCACCTCCAACATCCAACCTACATCCCCACAGAGTTTGAAGTCCACGTTAAaCATGGTCAGAAAGTTCTGGAAGTCCAGAGAGACGCTATCCACAAGAACCGGGGTCATGTGAAATTCCCTGAATTGTTCTCCACCATCAAGTACAGAGTAAATGTCACTGCATTCAATGCATTGGGAAAATCCTCCACTACCATTTTGTTTGATGAGTTCAATATAGTGAAACCAGATCCACCTGAAAAGGTTGTGGCTTTACCCATCCCCAACAATGTGCGGAGACTGGAAGTCACCTGGAACAGTCCCTCCACGTGGCCGGATGTCGAAAATTTCCCCCTGAAGTACTTCCTGCGGTACAGGCCGCTCATCCGTGACCAGTGGCAG

Function

symbol description
cntfr Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including central nervous system; cranial ganglion; hindbrain neural plate; immature eye; and pectoral fin musculature. Orthologous to human CNTFR (ciliary neurotrophic factor receptor).

NR:

description
PREDICTED: ciliary neurotrophic factor receptor subunit alpha

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010024 True 444 mRNA 0.48 3 10793932 10798679

Neighbor

gene id symbol gene type direction distance location
AMCG00010026 NA coding upstream 39384 10753792 ~ 10754548 (+)
AMCG00010027 NA coding upstream 381822 10411706 ~ 10412110 (+)
AMCG00010025 NA coding upstream 434358 10333220 ~ 10359574 (+)
AMCG00010020 NA coding upstream 494289 10291974 ~ 10299643 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding upstream 639570 10145553 ~ 10154362 (+)
AMCG00010028 NA coding downstream 95530 10894209 ~ 10909942 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding downstream 286001 11084680 ~ 11085921 (+)
AMCG00010037 NA coding downstream 378413 11177092 ~ 11181005 (+)
AMCG00010036 NA coding downstream 417032 11215711 ~ 11244369 (+)
AMCG00010043 NA coding downstream 629880 11428559 ~ 11439004 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 461434 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 477834 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 796047 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 853497 9874868 ~ 9940435 (+)
G77395 NA non-coding downstream 178984 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 556412 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 786275 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 792539 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 942969 11741648 ~ 11743415 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 480446 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 3731198 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4708126 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 5024880 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5545751 5232632 ~ 5248181 (+)
G77423 NA other downstream 350947 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 491224 11289903 ~ 11389245 (+)
G77541 NA other downstream 902027 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4193240 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4725767 15524446 ~ 15534087 (+)

Expression


Co-expression Network