AMCG00010025


Basic Information

Item Value
gene id AMCG00010025
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10333220 ~ 10359574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010025
ATGGAAACGAAGAAAAAGCGCACCGATTTTGATACTGCAGAGCACCAGCACCTGCGCTATAACCCTCTGAGAGACTCTTGGGTCCTGGTCTCTGCTCACAGGATGAAGAGACCTTGGAAGGGTCAGGTGGAGAAGCCCCCAGCGGACGAGATCCCACGACAGGACCCCTCCAACCCCCTCTGCCCTGGCAATACAAGGGCAAATGGGGAGGTTAACCCTGACTATGACAGCACTTTCCTGTTTGATAATGACTTCCCAGCCCTACAGCCTAATGCTCCAGAGCCAGGAACCAGTGACCATCCATTGTTTCAGACAAAAGGTGCCAGAGTGATGTGTTTCCACCCCTGGTCTGATATCACCCTGCCACTGATGAAGATGTGTGAGATCAAGACAGTGATTGATAAATGGGCTGAGTTAATAGAGGACCTGGGGGCCACATACCCCTGGGTGCAGATCTTTGAGAATAAGGGGGATATGATGGGCTGCTCCAATCCACACCCACACTGCCAAGTGTGGGCCAGCAACTTCCTCCCCAATGAGCCAAGTCTATCAGACCGCTGCCAGCGAGAGTACTACAAGAAGCATGGAGTGCCTTTGCTACTGGACTATGCCACACAGGAGGCCCAAAGACAGGCATGA

Function

GO:

id name namespace
GO:0006012 galactose metabolic process biological_process
GO:0008108 UDP-glucose molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00965 galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010025 True 639 mRNA 0.53 8 10333220 10359574

Neighbor

gene id symbol gene type direction distance location
AMCG00010020 NA coding upstream 33577 10291974 ~ 10299643 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding upstream 178858 10145553 ~ 10154362 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding upstream 414049 9914042 ~ 9919171 (+)
AMCG00010013 antxr2 coding upstream 619940 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 645121 9672221 ~ 9688099 (+)
AMCG00010027 NA coding downstream 52132 10411706 ~ 10412110 (+)
AMCG00010026 NA coding downstream 394218 10753792 ~ 10754548 (+)
AMCG00010024 cntfr,LOC106572571 coding downstream 434358 10793932 ~ 10798679 (+)
AMCG00010028 NA coding downstream 534635 10894209 ~ 10909942 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding downstream 725106 11084680 ~ 11085921 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 722 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 17122 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 335335 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 392785 9874868 ~ 9940435 (+)
G77255 NA non-coding upstream 407110 9922721 ~ 9926110 (+)
G77395 NA non-coding downstream 618089 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 995517 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 1225380 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 1231644 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 1382074 11741648 ~ 11743415 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 19734 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 3270486 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4247414 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 4564168 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5085039 5232632 ~ 5248181 (+)
G77423 NA other downstream 790052 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 930329 11289903 ~ 11389245 (+)
G77541 NA other downstream 1341132 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4632345 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 5164872 15524446 ~ 15534087 (+)

Expression


Co-expression Network