AMCG00010034 (rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594)


Basic Information

Item Value
gene id AMCG00010034
gene name rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11084680 ~ 11085921 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010034
ATGCAAGCCAAACTGGACCGGGACATATTTGGGATGCTCCCTGCTGCTGTATACAATTACAACACCAGCTTTATGTTCAACAGGACAAATCGGTCTTGGGCGGAACTGTTCAATATCTTGGAGCTGGATAAAGCCGATTTCGTGGGCGACGGATCTGCTATCCTGAGAATCTTCATTTCTACAGTTTACTCTGTCGTCTGCGCCTTGGGGCTCATTGGAAATATACTGGTCTTGTACCTTATGAAGTCTAAGCAGGGATGGAAAAAATCGTCCATAAATCTGTTTGTGACCAGCCTGGCTGTAACCGACTTCCAGTTCGTCTTGACCTTGCCGTTCTGGGCCGTGGAGAACGCTTTGGATTTCACTTGGCTGTTTGGCAAAGCTATGTGCAAGATCGTGTCTTATGTGACCGCCATGAACATGTATGCCAGTGTCTTCTTTCTGACCGCCATGAGTGTAGCACGCTACTGGTCCGTGGCCTCAGCCTTGAAGAGTAAGAGGAGACCCCCTTGCTGCTCAGCCAAGTGGATGAGCGCACTGATCTGGGTAGCCGCCATCCTGGCCGGTTTGCCCCACGCTGTGTTCTCCACAACCTCCAGAGTGTCCAATGAAGAACTGTGTCTAGTTAAATTCCCTGACAACAGCGGCGATGCCCAGTTTTGGCTGGGGATTTACCAAGCGCAAAAGGTGCTGCTGGGTTTTGTCATCCCCTTGGCAATCATAACCGTGTGCTATTTGCTCCTGTTGCGCTTCATCACCAACAAAAACGTCAACACCTCTAGCACCAAGAGAAGATCCAAAGTGACCAAATCCGTGACTATAGTCGTGCTTTCCTTTTTCCTGTGTTGGCTGCCCAACCAGGCGTTGACAGCATGGGGGATCCTGATCAAGCTCAACGTGGTCCACTTCAGTTACGAGTACTACACCACCCAAGCCTACATCTTCCCGGTGTCCGTCTGCTTGGCTCACTCGAACAGCTGTTTGAACCCCATCCTGTACTGCTTGATGAGAAGGGAGTTCAGGAAAGCTTTGAAAAACCTCTTCTGGAAGATCACGTCTCCTTCGGTCACTAACATGCGGCCATTCACGGCCACCACTAAGCCCGAACTGGACGAGCAGGGCAACGCGTTGGTGCCTCTGACCCCGGCTGAGCCCGCACTGATATTTTACCCCCCAGGAGCGGCCATATACAACGGCAGGTACGACCTTCTCCCCAACAACACCACGGAGCAGCGGTACTAG

Function

symbol description
rxfp3 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in female organism; hindbrain; interrenal primordium; and male organism. Orthologous to human RXFP3 (relaxin family peptide receptor 3).

NR:

description
PREDICTED: relaxin-3 receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG:

id description
K08397 RXFP3, RLN3R1; relaxin family peptide receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010034 True 1242 mRNA 0.52 1 11084680 11085921

Neighbor

gene id symbol gene type direction distance location
AMCG00010028 NA coding upstream 174738 10894209 ~ 10909942 (+)
AMCG00010024 cntfr,LOC106572571 coding upstream 286001 10793932 ~ 10798679 (+)
AMCG00010026 NA coding upstream 330132 10753792 ~ 10754548 (+)
AMCG00010027 NA coding upstream 672570 10411706 ~ 10412110 (+)
AMCG00010025 NA coding upstream 725106 10333220 ~ 10359574 (+)
AMCG00010037 NA coding downstream 91171 11177092 ~ 11181005 (+)
AMCG00010036 NA coding downstream 129790 11215711 ~ 11244369 (+)
AMCG00010043 NA coding downstream 342638 11428559 ~ 11439004 (+)
AMCG00010048 NA coding downstream 354718 11440639 ~ 11457795 (+)
AMCG00010049 NA coding downstream 372192 11458113 ~ 11465569 (+)
G77395 NA non-coding upstream 106176 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 752182 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 768582 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 1086795 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 1144245 9874868 ~ 9940435 (+)
G77445 NA non-coding downstream 269170 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 499033 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 505297 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 655727 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 938900 12024821 ~ 12025152 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 771194 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4021946 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4998874 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 5315628 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5836499 5232632 ~ 5248181 (+)
G77423 NA other downstream 63705 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 203982 11289903 ~ 11389245 (+)
G77541 NA other downstream 614785 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3905998 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4438525 15524446 ~ 15534087 (+)

Expression


Co-expression Network