AMCG00010036


Basic Information

Item Value
gene id AMCG00010036
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11215711 ~ 11244369 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010036
ATGCTGATGGATTGTGCTCTGTGCTTCTCCCCTCAGGGCCACGAGTGGAACAAGAACGACGACCGCCTGCTGGGCGCTGTGGAGCACGGGGAGACGGACAAGGTCACCTCACTGCTCGCCAAAAAGGGAGTCAATGCTGTTAAACTGGACAGCGAGGGAAAGTCAGCCCTCCACTTGGCAGCAGCAAAGGGACAAGCCGAGTGCCTGGGGCTGATTCTGGCACATGGAGCCGATGCCTCTGTTCTGGATGCTTCAGgttCTAGTGCGTTACACCTGGCAGCCAAAAACAACCACCAGGAATGTGCCAAGAAACTGATTCAGAGCAAATGTGCGATCGAGGCCCTGGACAACACTGGAAAGACAGCACTTCATCATACAGCGGTGATCGGCAGTGTACAGTTTATTCGGCTCCTCTGTGAACATAAGTGTCCAGTCAATGTCAAAGATGTGGATGGAAACACTCCTCTCCTGCTGTCGGCCAGGCATGCCCAGGCAGATGCGTGCAGGAGCCTGGTCGAGCACGGGGCAGACATCAACGCCTGCGACAAGAATGGAAGGACAGCGGTGATGCTGGCCAGCGAGAGCAGCAGTGTGCCCACAGTGCAGGTCCTCATTGAGAAGGGGGCTGACCTAACCCTGACGGACTCGCTCGGCCATGACGTGCTGCACTACGCCAAGCTCTCCGGGAACCCAGAGGTCAAGAGCCTGCTGCAGGTCACACTGGGTAAGCCGTGCCCCGATTCCgGAACAGAAAAGACGACACCCAAACAAATCCAGAACTACCAGTCAAGTGATTTTTCTTCTCCACCATATATGACCCCAACTCAGACTCCACTGTCCACTAAAGATGATTCGTTCATGGAATTCTCTCTTAagATGGCACATAATGGGAATGAAGAGGAAAGCgtaataattacattacaagCGAAGATTGCTTCTCTTTCCCTGGAAAACCAGCAGTTGGCTCAGATTTTAAAGAAGAGATCGGCCCATCAGACTGAGGAGGACAGTTTGCGCTTTGGACGAGATGAATCTCGGCCTAACAGCTTCGATTCAAATGCATCCTTCCACTCCACAAAAGCCGACTTTGACCAGTCCACAGATTCCCACGATGTCCTGGCACAAGAAagtgaagaaagtgttttggaaGAGTCTACATTGGACACCAGCAACGCCTCTGTGAGACaaaaagagggagaaaaggagagCGAAGAGGAGGTCAAACTACTGCGGGATGCTTTGCAAAGTCTCCAAATAAAGCTGCAAGAGTCCCAGTTAGAGAATCAGAGTCTACAAGCCAAACTTCTGCCGGCGGGCTCTGCAGATGCTCTCCAGCCCAGTTCAGAGGACTTGGTTGAAAATGTCTCTGAACTGAAGGAGAAGATCAAAGAGACGCAGTGCAAATATGAGGAGGCCATGCAGCAAGTGCTAGCCCTTAAGGCTGAAAGATGTTTGGAACCAGTCGCCTCAgatgaaaataacacaattcCCAACCTACAAGGATTACAAGTTATGTATGAGGATGAAATTAAAGATCTGAAGGAAAAACTGTCAAGGGCATTGGAAGAGCAGGAAAGAGATGCTAACTTGATAAAGCAATTAGAAAGCAAGCTAGAGACCATGGACAACAGGGTATCAGCAGAACAGTGTGAGGAGATGAAACAATCGTACAGCATGCTGGTAGATAACATTAACCAAGAGAAGGCCCTGCTCATTGATAAATACAAAGAGGCGCAAGAAGACATCAAAATGTTACAAGAAGCCTTGAAAGGCACAGTGCCAGTGGAAGCCGCCGCTAAAGACTTTGAAGAAATGAAAGCGGAAATGGGCCAGACCATCGACGGGCTGCAGAGGCGGCTGCTCGAACTCTCGCATTCATACAGCGAAGCCAAGAGTGAGCTGAGCGCGGCCCGAAACAGTCTGTCTACCTCTCCACTGGAGGAACAGAGGCTCAAGGAATACGTGACCAAGGAGCATCATGATCAAGTCACACAAGATTTTGCCCGCAGAATAGAGGAGATGAAGGAGGGCATCACAGAAACGGATGCCAGATATCGGGAAGCGCTGAAGGAAATCGTTCTGCTAAAGGAAGAAGCTGAAAGTCAAAAGCAGAGCTCCGTGACCATCAGCGACCACATGCAGGTAGTGTCATCTCTAGGAAGTGCAATCAAGGAGTTGGAAGCCCAAGTGGGCAAGCTCAAAGAGGAACTTTCTCAGAAGATGCTGGAGGTCGACTCATTAAAGCAGCAGTTGTCTGCAGAGAAGAGCACCTTACGGGAGGACTCGATACCCAGGAGGGCACACGAGGAACTGAAGGATGCCCTGGAAAGCGAGATAAGACAGCTGACCGTTAACTTACAGCAAGCCTTAAGGAAGCAGGATGAGTTGTCCTTAGAAGTTGCCCAAGCATGGCAGGAAGTAAAggaagtaaaaaatgaaaagcaaaccaTTCAGGGAATAGCGACATCTAAAGATCAAGAAAACAATGAGCTGCAGGCCAGATACAAGGAGGCTAAAGAACTTGTCAGTCATTTGAAGAAACAAGTGGAGAGTTTCTCCGACATCGAAGAAGACAAAGATAAGAAGATTGAGGATCTGACGAAGGAAGTGAGCAAGCTGAAGGATGCGCTGAACAGTCTCTCCCAGTTGTCCTACACAACCGGCACTCCAAAGAGGCAGAACCAGCAGGTGGACTCGCTTCAGCAACAAGTGAAGCAGCTGCAGTTCCAGCTCTCAGAGTCCAAAAAGCAACACCAGGAGATTGTGTCAGTTTACAGGATGCATCTTCTGTATGCTGTCCAGGGGCAGATGGATGAAGATGTGCAGAAAGCCCTGAAGCAGATTCTCATGATGTGCAAGATGCCCTCTCAAGCCAAGTGAGTAGAAGAGGACTGCAACTGGGACTGCAACACCTACTCAGCATTTCAAAGACCGATTAAACTGGACTGCCCTTTCCTTTTTTGGTCCAAGTCCGTCCACTACAATGCATATTGCCAATATCATCTGTGATTCTTGCACAACACACATCTTGACATGGAACAGAAGATGTGAATTTTGGTCATTTTGGTGAGAGCCAGTGCTGTAATTAAAAGTAAGTCTCtctcacagaaataaatgataTCGTAAGAAACGCAGAACATTCCGCCCCCGAGTCGATCGTTCCGCCAAACATATCGCAATTTGTCACCTGACAGGCAGCATCCCTCAGCTGAAACAGCAGTTTTTCTTTAATCTACAGTGTTTATCAGGTAAATTATAAAAACTACaccttttatattataataaatattttaattatgaattaaataatttatttttgagcaATTCAAAGGTGCAGTCATGGCTTCCAAAAGACAAGCACATTAATATGTTTCCGCTAAGATGAAAAACTGTTCTCAGCaaaatttgttattttcttcttaatGAACCTTGTTTCTTGAgcatgtgtatttataaaacaatatttcctGGAAATATGCATGTTGTAAAGCTATTCtgcttttattaaatgcaaacaaggaaaacatttgtaatatttttacaaaaaaacatttattttcatttgtaataaaaacacacagcaatctATACCGGGCACTTTGTTGGCCCTGCTGTGTCACATCGCATGCTTTGAACAAAGGATTTTGGATTTGTGACCCTTTCatgtcacattattttataaagccTTTTTGCAgcaaatgtaaaacttttttttttttttatacaacgATCAAAGCATTAACTATTTATTAAGTGTCTTGTACTTGAATAACTACCTAATTGCAAAGCACATTGTAATCGTTGTAGGAAAAATGTggcattttaaaggaaatgttcTGGTATTGGTTTTCTCACAGGTTTTTGTTCACCACCCTGAAAAGTGATGTTGTCTTTCTCCCCACTgcttggatgttttttttttttgtgcatgttCAGATCTACAAAACATGAATGATTATAGAACACCAAATCTCCAGCCTCAATGGGGGAACATTcataatggatttttttattttacaaatactgtTACAGTTGGGAAGCATGGGTTGGGATTTTCACACGGCCATCCAATTTTAGTGCCATCTATCACAACACAGGAAAAGTGTAACATTACACAGATCAGATAGCGTGAGGATGTCGTACATTTCTCAACAATGTTTTTAGCTTCGTtacatttataaagtatttaaaaggaGCTGAAGAACAATGTccttgtgcatttgtttttcaattcgTTGCTTTTTATTGGCCCTAATTTTgtaattcctttaaaaaaaaataataataataatcaatacataTGTACTGCAGGAATTAAAGTGTTCGAggataaaaaattaaatgtataaacaattataaaaggCATAACAATGGAGTCCCATGGAGGTTTGCCACGATCGCTTCACAGTTGCGTAAGGCAGTTTGTTTGAATGCTGCTTCTGggattaattttaatattacacaGCACTTGATTTAGTCACTAGTACAGTAGGCGAAGGTCTTGGGTCGGTTTGGAAATGGAGTGaagtttgtattgtgtgttttaaagaattGATTGGCTTTATATTCTTTAATAATGCCAAAGCTTGCTCTTACATTTCCTGAGATGTAACCAGTCTTTCTGGTACGACAAGAATTGCAAACAGAATGATGAActcctgtctgtctcactcactGGTTCCTTTAGGCACTCATCTACAGAGCATCTCGGCAGGGTCTTGCGTGTGAAGCTTTTAGAGTGAAAGCAAACGTTCAGTATTTTTGCCTTAAACGTATGCGTGCGTCCCATCCTCAGACTGTCTTCTGATTCAGGTGCTCATATGACTGACAATGCTGCAGCAGCCCGACGGACAGAGCAGGAGAGGTGCTCATGGCTTTAAGTTCGTTTACAAGTGTTTGCCATGGACAAAGGCGCTCTTTAACTTCATGGGTATGAAGTAtaaatctgtgttgtgttggtaTTTTTGAAAGAAGGGATAttcttttcaatatttcttgttttttatgaCATTGTAATAGAAAGAAGAGGAATTTGATATTTTTGTCAATCACTTTTCTTAATTGTGACAGATTTccagttaaataaaacattggaacttgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010036 True 5102 mRNA 0.44 14 11215711 11244369

Neighbor

gene id symbol gene type direction distance location
AMCG00010037 NA coding upstream 34706 11177092 ~ 11181005 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding upstream 129790 11084680 ~ 11085921 (+)
AMCG00010028 NA coding upstream 305769 10894209 ~ 10909942 (+)
AMCG00010024 cntfr,LOC106572571 coding upstream 417032 10793932 ~ 10798679 (+)
AMCG00010026 NA coding upstream 461163 10753792 ~ 10754548 (+)
AMCG00010043 NA coding downstream 184190 11428559 ~ 11439004 (+)
AMCG00010048 NA coding downstream 196270 11440639 ~ 11457795 (+)
AMCG00010049 NA coding downstream 213744 11458113 ~ 11465569 (+)
AMCG00010050 NA coding downstream 222556 11466925 ~ 11469784 (+)
AMCG00010047 NA coding downstream 226783 11471152 ~ 11473944 (+)
G77395 NA non-coding upstream 237207 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 883213 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 899613 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 1217826 9996354 ~ 9997885 (+)
G77255 NA non-coding upstream 1289601 9922721 ~ 9926110 (+)
G77445 NA non-coding downstream 110722 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 340585 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 346849 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 497279 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 780452 12024821 ~ 12025152 (+)
G77423 NA other upstream 60242 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 902225 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4152977 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 5129905 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 5446659 5766337 ~ 5769052 (+)
AMCG00010041 NA other downstream 45534 11289903 ~ 11389245 (+)
G77541 NA other downstream 456337 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3747550 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4280077 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 4383976 15628345 ~ 15642841 (+)

Expression


Co-expression Network