AMCG00010041


Basic Information

Item Value
gene id AMCG00010041
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11289903 ~ 11389245 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010041
ATGTGGAAATGGATACTGACAAAGGGTGCCTCAGCCTTTTCACACCTGTCCTATTTCTCCCTGCTGGTCTTGATCTGCTCTTTGTCTGTCACCTGCAATGACATTGGCAGAGACATGCGTTCAACAGGGGTCACCAATTCTTCCTTGGTTGTCGGGAGACACGTGCGTAGCTACAGTCACCTCCAAGGAGATGTGAGGACGAGGAAACTCTTTTCCTTTCAGAAGTTCTTTCTCAGGATTGATAAAAATGGCAAAGTCAATGGCACGAAGAGCAAGGATGATCCCTTCAGTAAGGAAGGTGAACAAACGAAGCACCCCTCTGTACTGATTGTGCCAGCCTTCTCACTGACCTCAGAGTATGCGTTTTTCTCCAACCCCCAGTCCCCCCATCCCCTCCTTTTGAAGAAGAGCTGGCACCTACAGCTCACAGCGAAAGGGGTAGAAGAAGAagagcaagaagaaaaaaaaatccctcagTTTTGGTTCGAATACCACATCAAAGCTTTCAAAAGCAAACATCTAGAACAGGTGCTTTCTGCGACCTGCGCCACATCTTATTGTCAAATCACAGGCTTCAGCAACGGCAACTCATCTCTGGTACTGCAAGAGAAAGAGTTCTGTTCTCACATTCAGCCCAATCAGGTGGTCCTGTGGaGTGAGTTTGGTGTTGACTGCAAACTGAAGGAGAGAATAGAGGAGAATGGCTACAACACTTATGCATCGTCAGAAtggaagaacaagaagaagcAAATGTTTGTGGGTTTGAGCGCTAATGGCACGCCGCTCCGAGGAAAGAAAACGCGAAGGAAAAACACTGCGACACACTTTCTCCCCATCATGCaatacagcacagaacacaACAAGCTGCATCAGGCTGATGCCTCAAGACCATCAGTGTTGTTGCCTATGAAGCGTGGCGCGGGCATGATGATTGAAATCCAGTTAGTGGCACAGCTGCTCGAgaTGATGAGTAAGTTCTGGCAAGTCACAGAAGTTACTATAAAAGGCTTGGTGTATTTTTCTGGGAAAATCTCGAAATTTAATCTGGAAAACAACGCCAAATATGAACAGAGGGATGGAAAAGTCACCTTTGTTTGTAACGTGAAAATGTTAAGTGTCGGATATCTTTTGACCTCCAGATTTGTGCTCCGTACGGCCTCTGGTTCCCATGATGCCATCCCAGTCTGTGGCCAAGCTCACCTCAAAAGCGTTCAGCTGCTGCCAGGAGCGGTGACAAGGCCGCGCATTACTGTAGTGACACCACAGACACCaCTGTCAGGACCAGGCCATGCAGTTTCTACAGCTATTCCCCTTGACCCAGTGTGTCGTGCCTCCCAGCACCTTCACATGGTGTGCTCCTACACTGGGCAAGGGCCCTCACTGGTAGGCCTCCCGGACCTTGGCCTGAAGCGCATCGCAGGTTTTCTTAGCGTCGCCCAGCAGCATGCCTGTGTTGGGCTTGTAGAAGATGGGATTGTCCACTGCAGCGTAACCCACTCCCAGGGACCTCTTCATCACGATGACCTGCGAAGACCACAAGGACCATCAgtggataTAATAAAGTACTGTGGAAGCCTACTAAAGCGAAACACATCGTACCACACACACAGGCGCTGTTCAGCACAGCTTCCACCCTGGCTAAGGGGAACCAGCGGCACGGTGCAGGAGCGGCTGCCGAGAGGGGCGGGAGAGACCCGTTTCAGGCTGGCTGGGATTAATCAGCTGGAGGATGTTTTTGAAATGGTATCTGGTGTTGCTCACCTGTTTGGACTTCCAGACCTCAAGGACTGGCATCCCAGCGATGATCGAGTTGGGGTCTTCTTGGGCAGCGGAGTTCACTGTGTCATTTGCACCGATAACAAGGACCAGGTCTGTGTCTAA
>TU96652
CTCCATGCTTTTTAGTGTTGTTTCCAGCTTCTGTATCATTTGTATATTGTgagtttcagagccataagtgagcactggtagtatgcattgatcacaTACTTTGATACGCTTGGTTTCCTTTGAATAGCATGCAGTTTCTTCCAAATGACAAACTGTCTAAATACATCACAGAGTCCTCttctaataaatacaacatgaagactgaaggaaaataaaaactaaacagaacTACGAGttgttggcttgtttgtttattaggtATCTGTGATAATCCTTGATAAACAGTCTggagatttaaaacaaaaattcatTGCTCTCCAAGGCATGCTGGATTCAAAATTGAAATGTCAAGGGATTGGTTTACAAAGGTTTACAaagctgatatcaagaatataCAACCTACACCAATaggaactatatatatatatatatatataaaaagtactAGAAAACAGTCTGCTGTCCACAATGGTAGAATGTGAATTAAATGACTCCCTTCGTTTAATGGACCCTTCCCTTTTCTCGTGGACACAAGTCTGATCGGTTTGTGCAAGCCAAGACATCAAGTGTTcccagtgtttttaatttaacgtGAGAGTGCACAAAACAAGGTCTAATTATAATAACGTGCAGCTGGTCCGTTCCTGCAAGCAAAAATCCAGCCTCCTAACACCCAGGCAAGCCAAGGAATTAATCGTGCCTTTATGTTTATGTAGCTcagcaaaaatacaaaacaaagcaaacaaaagttGTACGTTTATAGTCATACCAAATGCTTcttgaagaaaatgtgtgaatTGGTCAGGTTAACAAGCTTGGAGAGGTAGGGTTGTTGTAATGGTAATGTTTGTTAGttacatataaatgtttttatttaaatgcatatcaggtctgtttaaattattaagaTAAGCTAGCTATATTAAATACAGTCTTGATGCAcacaaaattgtatattttctgtacTTCACTGAACAGCAGCTGAAGAACATGGCAAGACATGTTTGATGGAGACATTTTGTAAGGGGATTTACGCTTCCCACAGCACAAACTCCCAACAGCTCCATGCAGACTTCTtataaaaagaaagttaaaaaaatgtgcagttGCACAAATAAAAGCTTAGCCTACATATTACTTCAGGATTTTGCCATGCCTTATACACTCAATCGCTGCTGCTCAAATGAAGTCAAATGTAATGCATTGCTACTTTAAAGTGTTAAGCtggttatatttgttttaatgccaTTGGGGTGGGAGAATAATTAATACAGTAGGTTTAATTTAGAGCATTACCATCAATCTCATCATACTCCAATTTTAATGTTAGCTGGAAAAGCAACCACTAGCTTGAATTATTACCATTTCATCCACAAACACAGGAGATATAAATATTTCCTCACAACAAAGGCATTGGTTCCTGAGGCTGCTTAGATTCATGACAAACAACTTTCTAAATTCTGTAAGCGTAAGGGCTTCTAGTTGTGAAGAAACATTTAGTTCTCTGTTCAGGTTTACTTCATTTTAGGACCTTGCTGCCGCTTTACCTTCAAAATCCTCTAATACTGAAAGGCAGCCACCTGTCCCAAAGGTCCCGAGAACAGCATCAATTTTAACAGTTCTACCATCCTTCACCGTTTGGTTTACATGAAATACCACACACCATGGAAATCACAAAAAACACTGGTGTTCTTCACAAACAAAGCTGGTTTACAACTTAACTaaacatatataacaaaaaaattatttgatcatGAATTTAAAGGAGTGTCTGAACTAGATTTTAAAGCTAAAAAATGATTATGTAGAAAATATTTAACCTTACAGCctattttatctttttctaGATTCTTAAGCAGGAGAAAGATTTCTGCAGTACACACTATTTGGCTggtgaaaacaaataatgtggTACTACCATGGCTAGATTTCTTACTTGCTACTAAAAAGCGGCTAAACTTAAATAAATCTggtccaaaaaaacaaaacaaaaaacacgttTCAATTAAGCTATTAAGGGAAGAGATCACTACAATTGATTTCTACTGTGTTGCGTGTACACCTTTTGTTTCTGGAAAATCTTGTCTGGAAGCTGGAAGCGCTGAGCAAGAGGGGTCACTGATGTTAATCTGCCAATCAGCCTCTTTCTGAATTCAAGGCCCTCACTGGTAGGCCTCCCGGACCTTGGCCTGAAGCGCATCGCAGGTTTTCTTAGCGTCGCCCAGCAGCATGCCTGTGTTGGGCTTGTAGAAGATGGGATTGTCCACTGCAGCGTAACCCACTCCCAGGGACCTCTTCATCACGATGACCTGCGAAGACCACAAGGACCATCAGTTTGACTGAAAGACATCGCTCAAATCCAGTTTTGATGCTAGGAACAATCCAGCTTTCTACACATCTCCCCATGGTATGTCTTTTGCACCACTGCCGAGATGCTCTCTCCTATGTTCTCCTTCCATTGCTGGAAGCTGGACTCCACCAGAATTGCCACTTTTACATGCTGAGCCAGGCGAGGACTGGTCAGTGTGTTTAAATTAGCCTGCTGCTGGATGGAGTACTGGTGTATATCAGTAGAGGGCAAGAACCTCTTGACTAGAACGTCCAATGAGGTGGATAAGGTGTTAAAACCCATTCTGATTGTGTGGTGATTTTTAATCACATTCCAGTATTAGCAGTGCTGACAAGTGCCCTGGCCACACTCCTGTTCAGGCTCTGTCTCGCTTTGGATCCTTTggaatgaaaatcaataaatgttgtTGATGCTAGTTT

Function

GO:

id name namespace
GO:0022900 electron transport chain biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010041 False 1881 mRNA 0.50 14 11289903 11389245
TU96652 True 2769 lncRNA 0.38 2 11384397 11387199

Neighbor

gene id symbol gene type direction distance location
AMCG00010036 NA coding upstream 45534 11215711 ~ 11244369 (+)
AMCG00010037 NA coding upstream 108898 11177092 ~ 11181005 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding upstream 203982 11084680 ~ 11085921 (+)
AMCG00010028 NA coding upstream 379961 10894209 ~ 10909942 (+)
AMCG00010024 cntfr,LOC106572571 coding upstream 491224 10793932 ~ 10798679 (+)
AMCG00010043 NA coding downstream 39314 11428559 ~ 11439004 (+)
AMCG00010048 NA coding downstream 51394 11440639 ~ 11457795 (+)
AMCG00010049 NA coding downstream 68868 11458113 ~ 11465569 (+)
AMCG00010050 NA coding downstream 77680 11466925 ~ 11469784 (+)
AMCG00010047 NA coding downstream 81907 11471152 ~ 11473944 (+)
G77395 NA non-coding upstream 311399 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 957405 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 973805 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 1292018 9996354 ~ 9997885 (+)
G77255 NA non-coding upstream 1363793 9922721 ~ 9926110 (+)
G77517 NA non-coding downstream 195709 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 201973 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 352403 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 635576 12024821 ~ 12025152 (+)
G77661 NA non-coding downstream 759686 12148931 ~ 12152321 (+)
G77423 NA other upstream 134434 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 976417 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4227169 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 5204097 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 5520851 5766337 ~ 5769052 (+)
G77541 NA other downstream 311461 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3602674 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4135201 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 4239100 15628345 ~ 15642841 (+)
G78198 NA other downstream 4668286 16057531 ~ 16060087 (+)

Expression


Co-expression Network