AMCG00010043


Basic Information

Item Value
gene id AMCG00010043
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11428559 ~ 11439004 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010043
ttaagaaattatataatattagattaagaatatgtaaatgaatacatacatatataaattgtaatttaagttcctatttgtttttttttaaaggcagtcCAGTATAGGGTATATATGAGGCACTAGTCTTCCAATTTGACAAAAACATGATTCCCTTATtaatggatgtgtgtgtggggggggaataTGCAGTTTGATATTGTATGCATGTAATCGTGTGATACTTTCCCATAAAAGGCCATCACACACTGTAGTGTAACCCAATGCAAGATGTTTCTCTCCATTTGCACAGTGTAACTagtcaaaatgcacatttgataTATCGGCACAAGAGATGAGCGCAGGTCAGTGCTCAGCCTGCGCGGTCAACGGCCTCTCCGCTCTGCGCCGCATCCACTCCTGTCCTCTAGTGGCCGCCATGATCTCCCTGCCCAGAAACCCGAGCTGAGCGGCTCTGTGTGAACTCGCTCCGTCGTCGTTGTTGTTGCAGGAAGTCGCACCGTGGAAAGGTTAGAGTTTGTATCGTGCTGGCTTCCGAGTGAGACactcaaataatacatatcaaaAAGCAGGGGCGAATACAAGTGCTCGCATCTGCGCTGCCGGCCTTGTTCCCGGACTCCCTCTGCTCGGGCCCGGTGTCGGTCCGAATGCGGCTGCCGTGAGAGGCGCCACACAAGGCCTGTTCATTCGCGGGGATGTCGGAGCATTTCGATCGGGCTCCCGGAGCCGAGCGGAGCCGGGTGAAGCCCAGCAGCCCCGGACCCAAGGACCAGGAGAGCGGCCGGATCCCCGAGGCCGGGGGGGCGGCTGGAGAAGCGGACCCCAAATCAAGCCTGTTCAGTCAGCGGGAGCCTCTCCGGCAGCCCAGGACATCCCCTCCGCTGGGGGAGAGCAGCCCGAgtggagaTGTCAGAAGAGCATCCAAACCTACACACTTGActcacaacagcaacaacacgcCTGTACTGAAAACACAGGTGTCAGAGCCTCCTGTTGTGAACTCAAGTCTGTCGGTGAATGCGCCAGAGTTTTACCCAGCCAGTTACAACACCTACACGGACACCGCATATGAAGATGGGTCTGACGAATTTTACCTGCAGTCAGAACCCACTCTAAAAGAATTTGTGCAGGATTTCTTAGACCACCTGAATGAATCCCCCGGCTCATTTGAGGCAGAAATCGATCACTTCACCTTGATGCTGAATGGGTGGGTCACAACAGACGAGACGCTTCACGAACTTGTAGAACTAATCTATCAACAGTCCACATCTATCCCCAACTTCTCCTACACGGGGGCACGCTTGTGTAACTACATGTCTCAAAACCTGACAATCAGTCCACCAAGTGGCAACTTCAGACAGCTGCTACTTAAGAGGTGTCAAAAGGAGTATGAGCAGAGAGACCAGGCTGTGAGGGGAGATGAAGCTACTAGGAAAAGCTTTCATTCTTATGTCCTTTTCCTGGGGGAACTGTACCTGAACTTGGAGGTAAAGGGCTCCAAAGGACAGACAATGCGAGCAGAGATTCTGCTGATTGGGCTGCGTGACTTATTAACTGCACTTTTCTCAAACCCCCTGGATGGGAATCTTATCTGCGCTGTGAAACTACTGAAGTTGACTGGGTCAGTTCTAGAAGATACCTGGAAAGAGAAAGGGAAGTCTGACATGGATGAGCTGGTCAACAGGATCGAGAACGTCATCATCGATGCAAGCTGCAGCAGGGATGTGAAACAGATGCTGCTGAGACTGGTGGAGCTCCGGTGCAGCAACTGGGGGAGAGTCCACGCGGCCGCGGCCTGCAGTGACGCCACTCCTGAGAATGATCCCAACTACTTTATGAATGAGCCCACATTTTACACAGCAGATGGTACACCTTTTACTGCTGCTGATCCAgAATACTCTGAGAAGTACCAAGAGATATTGGATCGAGAGGACTTTATCACAGATTTGTATGAAGAGAACGGAACTGACACATTCGTAGATGACGAAGACGAAATGGACCCTGAAATCGAAGAAGCCTTTGAGAAGTTCTGTTTGGAGtctgagaagaaaagaaaaccatgagAAATGGCATCAACATAATTAGACTAGCACAgatgcattttatgtttatacTGCAGGAATGTTAGCAGCTgttagaaaaagagaaaaacgaaaaaaaaaacaacgaaaaaaaaaaagtttattaaaacattttagcaaCTATTCAAAGAGAAAAGGTATGTGCTTTACATGGACCACTTCCTGGCTCTTTTGTTTGAGTTTTATGTCGCTGGGATTTCTGTTTGCAGTAAGGCAGCACATTTACATACACTGTTATACCACACAGTTAGAATGCAGTGCTGGGATTGATGGTGGGGGTTCATTTTATTGCTTGTTTTGCTTGTACCAGAAATGTCGTC

Function

GO: NA

KEGG:

id description
K14322 PAIP1; polyadenylate-binding protein-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010043 True 2404 mRNA 0.48 11 11428559 11439004

Neighbor

gene id symbol gene type direction distance location
AMCG00010036 NA coding upstream 184190 11215711 ~ 11244369 (+)
AMCG00010037 NA coding upstream 247554 11177092 ~ 11181005 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding upstream 342638 11084680 ~ 11085921 (+)
AMCG00010028 NA coding upstream 518617 10894209 ~ 10909942 (+)
AMCG00010024 cntfr,LOC106572571 coding upstream 629880 10793932 ~ 10798679 (+)
AMCG00010048 NA coding downstream 1635 11440639 ~ 11457795 (+)
AMCG00010049 NA coding downstream 19109 11458113 ~ 11465569 (+)
AMCG00010050 NA coding downstream 27921 11466925 ~ 11469784 (+)
AMCG00010047 NA coding downstream 32148 11471152 ~ 11473944 (+)
AMCG00010044 NA coding downstream 54682 11493686 ~ 11516565 (+)
G77445 NA non-coding upstream 73197 11355091 ~ 11355362 (+)
G77395 NA non-coding upstream 450055 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 1096061 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 1112461 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 1430674 9996354 ~ 9997885 (+)
G77517 NA non-coding downstream 145950 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 152214 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 302644 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 585817 12024821 ~ 12025152 (+)
G77661 NA non-coding downstream 709927 12148931 ~ 12152321 (+)
AMCG00010041 NA other upstream 39314 11289903 ~ 11389245 (+)
G77423 NA other upstream 273090 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1115073 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4365825 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 5342753 6059242 ~ 6085806 (+)
G77541 NA other downstream 261702 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3552915 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4085442 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 4189341 15628345 ~ 15642841 (+)
G78198 NA other downstream 4618527 16057531 ~ 16060087 (+)

Expression


Co-expression Network