AMCG00010048


Basic Information

Item Value
gene id AMCG00010048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11440639 ~ 11457795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010048
ATGGCCTCGGTGAGTTTGATGGCCCTGTATGAGGACGAATCGGTGGAGGTCCGATACGGCGACGGCTCCTGTCTGCAGCTCTCTCCCTGCGGCTGCGAGTCCGTCCTGGAGAAGAAGTCACCCGTGACGTCACACCCTTTACAGCCGAATGAGAGGATCCGACAAAGAACCCGCTTCGAGCTGATGGTCAAGGCACTGGAGTTCAGAAACAGGTTTGCCACTCGGCCTTATCTCCCAGGAGAACTTATCCCGGCGAACAACAGAACACATTTTTACATCGATGTCTTGGAGGCTGAGTGGCCTGCCGAGGGCTCCGGTGGTGTTAAGCTCACTGACAATGGCCGGGTAACCGTGTCCTCTGTGGATGGGAGAGCTTTTCTTCACCTTTCATCTTCTGGGCAGGAGTTTTCAGTGGAATTTCTCTGCAAAGCCAGTCCAAAGATTTCCCAGCCTCTCACCCAGGAGGCAATGACAAGAAATACTGGGGGACATTCAGATATCGAGGAAATTGCAAGAGCAAGAACCTTCAAcatgaaacaaagtaaaaccGCACCTAGGATCCCTGAAGGCAAGGAAAATAGACACTCGGAGGTTACCGGTTTGGGGTCCTGTTCTAACCACAGCAAAATACATCAACAATCCCCTGTGCCTGGCACCTCGCAGACGCACCTCTACACCTGGGTGCTCCAGCACCATTCAGTGTTATCCTCTCCAGCCATCTGGCACCATCCCTTATCTCTAGCAATTGCAtttatgaagtccaaagaggaAGGAAACACAGCTGCCGGGAGTACTGAAGGAGGGAGGGCGCCAGAAGTGAGCTCTAACTCCCAGGAAGCTGATGTATTGAAGAGGGAGACCAGCTGCTTGCCTGGGCCTCTGCCCCTAAATTGCCCCATGCCTCACCAACACAGgtGGAACTATGGGAATACCCACTCAGATGGTGAGCAAGACTTGGAGCAACACCTGCGTACTGAACTTGTAAAAGTCGTTTGGTGCCAAGGAATAGTGTATCGGGTTATCAAGGGACTGATCACCACAGTAGAAATTTACCCTGGTGATGGCTCAGTCATCAGATCAAAAGGAGCAGTTGCAAACTACTTCACTCATCACACAGCCAAAGGCATTGCAGAGCAGACTGAAGAgaagatgtatttattgagtAGTCTACCCCCTGATGTACCTGGACAGAGATATTCAATTTCATCAGTTGTCACCCGTGCTAACAGAATCCTGCAGAGCTATAGCCAGACCAGACTTTCACTGAAGCTTCCTAACACTTTCTGCTGCTGGAAGGAGGAGAATAGCCTATCAGTCCTGACAACCATCCCAGTTCTTATAGAGGAAGCGCACATTCCAGACACTGGACGCTTCAGTGCCTTTTCGGATGGCAGAGTGCATGTTCTCTTCAGGGATGGGGTGACTCTGCACATGATGTGGAACTTCAGCTCTCAGTCATCAGATGCagagGGAAGGAGAGCAGCCCAGTTTCCCTCTGTGGATCATCAGCTGTGTGGGTGGTGTCAGCTGATCATGCCTGATGGGCAGTGTCACCTGGTATGTGAGTGCGGCTGTGAGGTGGTGCCAGTGGGTAAACCAGAGCCAGCAACGAAGAGGAGAGCCTTCCAGAAATGTCCAGTTCTCCTTGAAAACGGCGGGCTGCTGAAGTCCAATGCTGACCCCGATGGACTGAGCCGCAGTTCTTGTGAGGGTAGGGGTTCCACAGCGGGGCTCAATGAGAAGAGCATCTCTGAAGCTTTGGAAAGAACATCTAAAGCCATCAAAGACATTGAGATGCTGTTATCTAGCCGGTCTTCCGACAGCCCAAATGCTGTATAGGAGAGGATAGTGTTTTGTACCGTTACATTATTTCACACCTCATAACCATCTGAACCATCTCTTGTAGGTAATTTAGAAGCAGCAATGTATTTTGTGGGAAGCATAATCAGTTGTGTTGTTTCTGAGCAATGGAAGAACATTAGgatattatgaaataatttaacACCTCTGAAATGGTATCAGTGAGCATGTTTCATAATAATGTTGAACATATTTCTTAGTTATATTTTCTGCCTTTCTAAATAACTACTGCTgcagaaagaaagataaaaagatGCACTTAAGTATCCTAGTTTTGTGAAGAAATCTACAGCTGGGGAGTGATCTCCTCAAATGAAGACCATTTAGGCTGCCATCAAACTCATGAGACAGTTTctccattgttttaaatgtattttcaaagagCGGAACGCTTTCTCTTCAGGGTTGAAGGGTAATTCGTGTCCAGGGAAGGGAGCCAGCAGCACTGCACTTGTGCAGTATGGATTAACTTGGCAAACAATCTAAGCAGGGTTTGTGGTGATCTCACAGCACCTTCAATATGGTCTGCcaccagcaacaacaacaacagaacaggaaatgtgcatgtgtttaaaaaaagtcaattcTGCTTTTACTTGTGTTTGCGTGTAGAAATGGTGAATATTGTGGTGTCCATTTCATATTCGGAGACAGGTGGGCTTATTCCTTCACATATAAGCACTGATATCCCTAAAGGATAAACAAGTGATTGTGCTTAAGCCATCCCGTGGAATGTTTAGAAAGCTTTATACGATAATGAGTTTCTTTCCCAGTAAATATGGTACTTGGGAAATTAATGGATTTAAGGTAAGACGTGCTCTGTTTACATTCCCGACTACAATTCattgtttgtaattaaatgtgggGTGAGTTAACAAAGCATTCTTCCCAGACGTATTTCCCAATAGTCAACATGTGTCTTTTGACTCTGCTGTACAGATCAGGGTTTTAATGAATTGCAGATGTGAAGCCACTAAAGCATATCACGAACATTAACCCTTTAATTCCCCTGATGAATATTCTGTCTGActtgcaatttttttattttggctgctgaagtaaaatatatatataaataaaataaatgtgtatttacctccagtatttttgattgtttggaAGTCTTCATCTACAGCCCTAAGTACTTTTATAAAACAGAAGGTAATATATAGCACCTGAATGGCaaattatttgcattgtatCTGTAAAAAATCCTAAACCTTGTTTCATAAACATTGGATTATTTGCTTGTATTTTCAGAGTAGCCACATTTTGAGattgtttaaaatctttgtCAACCAACTCTAAACCATGTACACTATACttaccataaa

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010048 True 3194 mRNA 0.45 11 11440639 11457795

Neighbor

gene id symbol gene type direction distance location
AMCG00010043 NA coding upstream 1635 11428559 ~ 11439004 (+)
AMCG00010036 NA coding upstream 196270 11215711 ~ 11244369 (+)
AMCG00010037 NA coding upstream 259634 11177092 ~ 11181005 (+)
AMCG00010034 rxfp3,LOC107589282,LOC107681130,LOC107579623,LOC107706441,LOC107750484,LOC107703594 coding upstream 354718 11084680 ~ 11085921 (+)
AMCG00010028 NA coding upstream 530697 10894209 ~ 10909942 (+)
AMCG00010049 NA coding downstream 318 11458113 ~ 11465569 (+)
AMCG00010050 NA coding downstream 9130 11466925 ~ 11469784 (+)
AMCG00010047 NA coding downstream 13357 11471152 ~ 11473944 (+)
AMCG00010044 NA coding downstream 35891 11493686 ~ 11516565 (+)
AMCG00010045 rictor,LOC107681152,LOC107589259 coding downstream 62444 11520239 ~ 11573201 (+)
G77445 NA non-coding upstream 85277 11355091 ~ 11355362 (+)
G77395 NA non-coding upstream 462135 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 1108141 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 1124541 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 1442754 9996354 ~ 9997885 (+)
G77517 NA non-coding downstream 127159 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 133423 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 283853 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 567026 12024821 ~ 12025152 (+)
G77661 NA non-coding downstream 691136 12148931 ~ 12152321 (+)
AMCG00010041 NA other upstream 51394 11289903 ~ 11389245 (+)
G77423 NA other upstream 285170 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1127153 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4377905 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 5354833 6059242 ~ 6085806 (+)
G77541 NA other downstream 242911 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3534124 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 4066651 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 4170550 15628345 ~ 15642841 (+)
G78198 NA other downstream 4599736 16057531 ~ 16060087 (+)

Expression


Co-expression Network