AMCG00010062 (capsl)


Basic Information

Item Value
gene id AMCG00010062
gene name capsl
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 12137123 ~ 12140030 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010062
atgccAGGTACTGCGAGGCATGATCGGGAGATGGCAATGACTGCCAAGAAGCAGCTTTCCACAGCCACGGATCCCATCGACAGGCTGCGGCTGCAGTGCCTGGCGAGAGGCTCCTCTGGCATCAAGGGCCTGGGGAGgacTTTTAAGATCATGGACGATGACAACAACAGAAGTCTCGATATGAAAGAGTTTATTAAAGGTCTCAATGACTATGGAGTGATTTTAGAAAAGCAGGAAGCCATGCAGCTTTTCCAGCAATTCGACAAAGATGGAAATGGGACAATAGATTTCGATGAATTCCTTCTTTCTTTAAGGCCACCCATGTCCAATGCTAGGAAAGAAGTCATTATGCAAGCTTTTCGGAAACTTGACAGGACTGGGGATGGGGTGATAACCATTGAAGATTTAAAAGGAGTTTACAATGCAAAGCATCACCCCAAATATCAGAACGGAGAGTGGACCGAGGATCAGGTGTTCAGGTCATTCTTGGACAGCTTTGACTCGCCCTATGATAAAGATGGTCAGGTCACCCAAGAAGAGTTCATGAATTACTATGCTGGAGTCAGCGCCTCCATAGACActgatatttactttattttaatgatgaaaaatgCCTGGAAACTATAA

Function

symbol description
capsl Predicted to enable calcium ion binding activity. Predicted to be located in cytoplasm.

NR:

description
calcyphosin-like protein isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23909 CAPS; calcyphosin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010062 True 627 mRNA 0.45 4 12137123 12140030

Neighbor

gene id symbol gene type direction distance location
AMCG00010061 lmbrd2,LOC106568164 coding upstream 20608 12107561 ~ 12116515 (+)
AMCG00010063 NA coding upstream 42324 12085846 ~ 12094799 (+)
AMCG00010059 NA coding upstream 52060 12059775 ~ 12085063 (+)
AMCG00010057 NA coding upstream 230018 11871831 ~ 11907105 (+)
AMCG00010054 nup155,LOC106563918 coding upstream 270324 11846404 ~ 11866799 (+)
AMCG00010068 NA coding downstream 207960 12347990 ~ 12359546 (+)
AMCG00010067 NA coding downstream 225129 12365159 ~ 12370529 (+)
AMCG00010071 NA coding downstream 239408 12379438 ~ 12416428 (+)
AMCG00010073 NA coding downstream 284116 12424146 ~ 12436820 (+)
AMCG00010074 NA coding downstream 297689 12437719 ~ 12440223 (+)
G77621 NA non-coding upstream 111971 12024821 ~ 12025152 (+)
G77543 NA non-coding upstream 393708 11741648 ~ 11743415 (+)
G77515 NA non-coding upstream 497333 11591218 ~ 11639790 (+)
G77517 NA non-coding upstream 551023 11584954 ~ 11586100 (+)
G77445 NA non-coding upstream 781761 11355091 ~ 11355362 (+)
G77661 NA non-coding downstream 8901 12148931 ~ 12152321 (+)
G77669 NA non-coding downstream 30068 12170098 ~ 12171321 (+)
G77670 NA non-coding downstream 37198 12177228 ~ 12177489 (+)
G77673 NA non-coding downstream 68983 12209013 ~ 12214521 (+)
G77796 NA non-coding downstream 1259878 13399908 ~ 13400196 (+)
G77541 NA other upstream 436042 11700706 ~ 11701081 (+)
AMCG00010041 NA other upstream 747878 11289903 ~ 11389245 (+)
G77423 NA other upstream 981654 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1823637 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 5074389 7042597 ~ 7062734 (+)
AMCG00010101 NA other downstream 2851889 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 3384416 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 3488315 15628345 ~ 15642841 (+)
G78198 NA other downstream 3917501 16057531 ~ 16060087 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 4325534 16465564 ~ 16547620 (+)

Expression


Co-expression Network