AMCG00010094


Basic Information

Item Value
gene id AMCG00010094
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14440450 ~ 14447551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010094
TTTGTGAATCCATCCCTCAATTGTAAAGTGGGACAATcagccatttttaaaatgaagtggGTAACTTTAATTTCACTTGTAATTTTTATATCCTTTCCTCAGACCTCTGCAAACCGGGTCTGTGAATTTGTTTCTGCTGTAAAGGAACAGGGATTCAAAGCCATTGTTCTGGTCGGGCTGGCTCAGAATCTGCCCAAGAGCACTTATGAGGAGCTGAGGCCGTTGCTCATCCAGAGCGCAATAGTGGCACAGTCCTGTTGTGGAGCTGAGCCCAGCGCTGACTGTTCAAGAGAGGAGGCAGACCTTTTCCAGAGTGCGATATGCGCTTCTCATGAAATCACAGAGAAAAACGGTCTTGATGACTGTTGCAAATTACATGGCACCCAAAGAACTCATTGTTTTGTCgaccacaaacacaaaattccACACGATGCTTCTTTAAAACCTGATATACCAGAAAGTGAAAAGTGTGCAGACTATGAAAAAGACAGTTCGACATTTATGGGCCAcTTTATCTATGACTTTGCAAGGCGTCATGTTCTTCTGCAGCCACAAGTCATATTAGGAATTGCTCAAGGATATGAAAAAATTATCAAAGAATGCTGCAAAGATGCCAAAGGTGTCCATACCTGCTTCGATGACAAAAAGGCTGGTTTTAAGCATGCAATTGAAAACCGTGTCTCCGAGTTGAAATCTACATGTGTGATTTATCATACGTTTGGAAAGCGGATTCTCATGGCCAAgaaACTGGTGCAATACAGTCAGAAGATGCCACAAGCAACCTTTGCAGAAGTCAAGGCTATTACTGAGAGAATTGCAAATGTGACAGCCACCTGTTGCAGTGGTGATATGATTCAATGCATGAAAGAAAGGAAACACATGATCGATGAATACTGCGCAAATCATGAAGTTCTGGCGCGCACCAAACACTTTGCAGAGTGCTGCAAGGCATCTATAATTGAACGGGGGGCATGCATTGAGAAAATGAAGGCGGATGACAAACCTGAGGGCCTGTCACCTAAAGTTGAAGGTTTCATCAAAGACAAAGATGTCTGTCAGAAATACGCAGAAGCCCGTGATTTGTATATTGGAAAgtTTCTTTATGAATATTCAAGAAGGCATCCCGAATTGTCTATACAAATTATCTTGAGGATAACCAAAAACTATGAAGAGGTTTTGGAAAAGTGCTGCAAGACTGATGATCCTCCTACCTGCTATGGCTCAGCTGATGCACAACTAGCAAAGGCTATTGAGACTGAGCTACtgcactttaaaaatatgtgtgCCTTTGAGACCACCAAGGGGGAAGaagcatttgaaaaacaGATGATTGTCCAGTATACAAGAATAATGCCACAAGCTGGTTTTGAAGGCGTGGAATATGTGGCCCATAAAATAGCTGATGTCATGGATCACTGCTGCAGAGAGAAAGATCTCGACCATCATTTGCTTCCCTGTGCTGAGGAGAAACTGACCAATGCTATTGATCAGACTTGTGTAGATTATGACCCTGCTACCATAAATGCTCACATTGCACACTGTTGCAACAAATCCTACTCAATGAGAAGACCCTGCCTTCGCGAGATCAAACCTGACACAGAGTTTGTGCCACCAGCAGTTTCAGAAGACCTGTTTCCCATGGGACCTGGATTGTGTCACGGGACACCAAAAGATTTGTTCAAGTCAGCAAAGAGGCTCCTTTATACTGTAGTGAGACTGAAGACTACTATACCAGCAGAGAaacttcaaaaaataataacatcgTTCCATGACCTAAAGACCAAATGCTGTGCTGAAGCTGACATCGCAGCTTGCTTTGCAGCTGGGCGAAAACAACTGGTGATTGACAGTCAAGCACTTGTTGCCTAATGGATTtatgGTTTCATTTCAAGACAAGGAAGCTACACTGGCACCATTTTCTTGCACCTTTAATGCAtgatttgcaaaatgtaaacattcacAGTGCTTCTGTAAAGAGTCTACATGCTGTAATATTCCTGAAAgtcaaaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K16144 AFP; alpha-fetoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010094 True 2010 mRNA 0.42 15 14440450 14447551

Neighbor

gene id symbol gene type direction distance location
AMCG00010093 NA coding upstream 21643 14407608 ~ 14418807 (+)
AMCG00010095 rfx3,LOC106568181 coding upstream 43567 14376602 ~ 14396883 (+)
AMCG00010089 NA coding upstream 133321 14294518 ~ 14307129 (+)
AMCG00010087 bmpr1b,LOC105901127,LOC108435137 coding upstream 801789 13625828 ~ 13638661 (+)
AMCG00010085 pdlim5 coding upstream 924945 13468696 ~ 13515505 (+)
AMCG00010096 slc20a2,LOC107724891,LOC107602837,LOC107669617 coding downstream 42360 14489911 ~ 14514093 (+)
AMCG00010098 ctif coding downstream 208934 14656485 ~ 14671402 (+)
AMCG00010099 NA coding downstream 252769 14700320 ~ 14740969 (+)
AMCG00010102 add1,LOC107737461 coding downstream 530595 14978146 ~ 15000756 (+)
AMCG00010109 NA coding downstream 637551 15085102 ~ 15099005 (+)
G77796 NA non-coding upstream 1040254 13399908 ~ 13400196 (+)
G77673 NA non-coding upstream 2225929 12209013 ~ 12214521 (+)
G77670 NA non-coding upstream 2262961 12177228 ~ 12177489 (+)
G77669 NA non-coding upstream 2269129 12170098 ~ 12171321 (+)
G77661 NA non-coding upstream 2288129 12148931 ~ 12152321 (+)
G77958 NA non-coding downstream 512721 14960272 ~ 14961505 (+)
G77954 NA non-coding downstream 556483 15004034 ~ 15047855 (+)
G78007 NA non-coding downstream 757123 15204674 ~ 15221655 (+)
G78012 NA non-coding downstream 781342 15228893 ~ 15232199 (+)
G78032 NA non-coding downstream 859499 15307050 ~ 15308646 (+)
G77541 NA other upstream 2739369 11700706 ~ 11701081 (+)
AMCG00010041 NA other upstream 3051205 11289903 ~ 11389245 (+)
G77423 NA other upstream 3284981 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 4126964 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 7377716 7042597 ~ 7062734 (+)
AMCG00010101 NA other downstream 544368 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 1076895 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 1180794 15628345 ~ 15642841 (+)
G78198 NA other downstream 1609980 16057531 ~ 16060087 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 2018013 16465564 ~ 16547620 (+)

Expression


Co-expression Network