XLOC_006050 (lrit1a)


Basic Information

Item Value
gene id XLOC_006050
gene name lrit1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29462249 ~ 29467558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011931
TGAGGGGTGGGCATTACACATCATGACCAATTCGCAAACATTTCCTCCCTTTAATTAACAGCTGTATCTCTGTGTAGCCTATCAGATTGCAAGATTGCGCAcgcaaatgaatgaaaataacgcGCGTGCTTGCGCTAATCCTCGTCTGTCCTTTTTAtctgcaggacttgtatctgtcagaTCACTATGGGATATCGGAGCAGAGGGACGATGACATGCTGGTTATTTTTCCATAACTGCAAGTGGATGGTTCTTCATTAAAACTACGTTCCGCGGTGTTGTATTGACACTTGTGGCGAAATGTCTCTCACTGTCTTTTTGGGTCTCCTACTGGCATCTGGAGGATTTCCACTTGTTCGGAGCACCTGTCCTACACAGTGCAGCTGCTTTTATCATAACTTGAGTGATGGATCAAGAGCCAGGAGCGTGATTTGCAATGATCCAGAGATTTCCCTGGTGCCCGCCTCATTCCCAGGCGACACATCCAAACTTCGCATCGAAAAGACTGCCATCAAGAGGATCCCGAGCGAGGCTTTTAGTTACCTCTCAAACTTAGAATTTCTCTGGATGTCGTTTAACGTTTTATCCTCTCTGAACTCGGACAGTTTCCGCGGCCTATACAGTTTAGAGGAACTAAGGCTGGATGGAAATTCGCTCTCTTCGTTTCCGTGGGAATCCCTGATGGACATGCCGAGTCTGAGGCTCCTTGATATCCACAACAATCAGCTCTCCTCGCTGCCTTCTGAAGCTGCTCTTTACATGAAAAACATAACCTATCTGGATTTATCCAGCAATAATCTGCTGACGGTACCAGCCGAAGTTCTCAACACTTGGTTGACAATTAAACCCACCCTGGGAGCAGAAAGTTCAAAATTGATTCTTGGTCTTCATGACAACCCCTGGCTGTGCGACTGTCGTTTATACGATCTTGTCCAGTTCCAGAAGTCTCCCAGTCTGTCAGTGGCTTTCATTGACACGAGGCTTAGGTGTGCTGATCCAGAGAGTCTGTCTGGAGTTCTGTTCAGTGATGCTGAGCTCCGGCGCTGCCAAGGACCTCGGGTTCACACTGCTGTGGCCCGTGTTAGAAGTGCAGTGGGAAACAATGTCTTGCTGCGATGTGGAACCGTTGGGGTTCCCATCCCCGAGCTGGCCTGGAGAAGGGCAGATGGGAAGCCACTGAACGGGACAGttctaCTGGAGAATTCGAAGGAGGGAATTGTTTGGTCTATTTTAAGTGTACCAGCCGTATCCTATCGCGACACTGGAAAATACATCTGCAAAGCCACAAATTATGCAGGCAGTGCAGAAGCTGTGATTTCTTTAATCATAAACGATGCACCCAAAATGGAAAATCCAACCCTGGAtccaaaacccaaactaaagtcCAAAAAGCCAAACACTATGGTCAAAGCAGCATATCAAGAAAAACACATCGCCACTTATGTTTCCCCAACACCTAAAAATGGACTACCACTCAGTGGCACAGTGAGCTACACAGGCCCGTATCCTGGAATGGAGAGCGACAATGCTGCTAACAGTCGAATGAATACCCAAACAGCCAGTCCAGATGGCTTCTTGGAAACCAATCTGAGCAACTTGGCCGCAAACACATCCTCGCTCCAACAAGACCCTGACAGGGTAGTGCGCTCTGTGAAAGTGATTGGTGATACAGACTACACTGTGTGTCTGAACTGGAGGGCTCCGACCGCCAAAAACACCACCGCCTTCAGCGTCCTCTACGCTGTGTTTGGGGAGAGAGATATGCGCAGAATTAACGTTAGTCCCGGCAACAACCGGATCGTCATTGAGGGACTGGTTCCAAAAACCAAATACATCGCCTGTGTGTGCGTCAAGGGGCTGATCCCCAAAAAGGAGCAGTGTGTAATCTTCTCAACAGATGCGGCAGCGAGCGCTAATGGAACCCAAAAGCTCATTAATGTAGTAGTAATCACGGTCGCCTGCGTGATAGCTGTGCCTCTGACTGTGATCGTGTGCTGTGGGGCGCTTAAGAGGAAAATTAAGAAGTTTCTGGGCAAGAACTCTAAAGACATTCAGGACTCGTATGTGACTTTTGAGACTCTATCTCCTAGCACCAAGGCCAAAGGCTTGGAGGGGGAATATCTTACCAGACTGAATGCTGAAGAGTCCAACAGACTCCTGTCAGCCCGCTCCAGCTTAGACTCGGAGTCCACTGCCAAGATTGAGGGACAGCCAAATGAATACTTCTGCTGACAGTATCCCTCAGCCACGATTCCACCACGCAGCCTGCCGAGTATCCAGGCCCAGCCGCAGTATCTGAGTGCACATAATCTGTACCAGCAGTACATGGCTGGCCATCCGTGAAGAAGCTTCTGGATACATTGCATACGTAACAAAGCGCACCACGTCGGTCTTTGTTACTGTGTATTTGGACTTGGTTTCTAAACTAAGCCATTTGGCTGGTGGTGGGGTTGTGGCTGAGCGATCCCAGGAACTACATATATAGACCCTTTTAGATGTGCTAGGAGGAACTGACTCAAAGGGAAATGTTCATATGAAAAATGTTCTTATTcttgtatatttgtgtatatcgaaacatttattaatatgtgatgataataataataataatatgtacagAATTGAGTAATTTCtacatacactcttaaaaataaaggtttaattttgttttcacaatactgtagaacaggggtgtccaaactctggaGGGCCACTGTTcagctgagtttagctccaacttgcttcaacatgcCTGGCAGGaaatttctagtatatctaggagcttgattagctgattcaagtgtgtttgattagggttggagctaaactctccagaacaccagccctccaggacagagtttggacatccctgctgtAAAACAATGTTTTGGTTCCCCAAAGAACCTTTTAGGAAACTTTTCTTAAAGAGAACActctctacttgttccaaaccgaaTTGAGTTTCTTtatgctgttgaacacaaaggaaaatataCTTATCGACTTCCATACTTTGGATGTGATTGGCTGCTTTTTCGCAACCTTCCTCAGAATAActtgttttttgttcaacagaagagagaaattcataaatgtttagaaCAACTTGAGTGTGATCAAATAGTGTGgtaattttcctttttgggtcaACTCTCTCTTCTTTAATTTTCAGTGTGGACAAAAATCCTGACatcttttttacttttaagaTTGCAAACATGGCATGACTCCCACTCTTGTGATATTCCTAATCTGCAAGAATTTAAATTATCCTTAGAAATAGGACAATCTGATCtcacaaaattattaaatattgataCTCCAGTGACTCAATGCTTATATATTCAGAAACTCTGACTGTCTTAAAAAAACTTGACTAATTTATTCAAACACTGTTCAATAAATGAGTGATCACTAACAAGGAAAA

Function

symbol description
lrit1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040924-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1).

Ensembl:

ensembl_id ENSDARG00000019179

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011931 True 3427 mRNA 0.45 4 29462249 29467558

Neighbor

gene id symbol gene type direction distance location
XLOC_006049 NA coding upstream 12528 29446817 ~ 29449721 (+)
XLOC_006048 ogdhl coding upstream 55554 29352842 ~ 29406695 (+)
XLOC_006047 parga coding upstream 112925 29292011 ~ 29349324 (+)
XLOC_006046 myofl coding upstream 173347 29238850 ~ 29288902 (+)
XLOC_006045 unc5b coding upstream 234446 29127960 ~ 29227803 (+)
XLOC_006051 lrit2 coding downstream 2884 29470442 ~ 29474304 (+)
XLOC_006052 chst3a coding downstream 42465 29510023 ~ 29520852 (+)
XLOC_006053 CT025909.1 coding downstream 123436 29590994 ~ 29591115 (+)
XLOC_006054 CT025909.2 coding downstream 287735 29755293 ~ 29755427 (+)
XLOC_006055 pax2a coding downstream 303279 29770837 ~ 29805529 (+)
XLOC_006042 NA non-coding upstream 364723 28915538 ~ 29097526 (+)
XLOC_006044 NA non-coding upstream 378958 29083087 ~ 29083291 (+)
XLOC_006043 CU639469.2 non-coding upstream 537284 28924846 ~ 28924965 (+)
XLOC_006039 NA non-coding upstream 644367 28808092 ~ 28817882 (+)
XLOC_006056 NA non-coding downstream 421631 29889189 ~ 29891820 (+)
XLOC_006063 AL929330.1 non-coding downstream 784183 30251741 ~ 30251857 (+)
XLOC_006065 AL844152.1 non-coding downstream 1044049 30511607 ~ 30511723 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09789066_09792437 LRIT1A coding CI01000012 null 9787695 ~ 9792437 (-)
bowfin (Amia calva) AMCG00002946 LOC108442250 coding CM030139.1 CM030139.1 7412109 ~ 7425081 (+)