AMCG00010109


Basic Information

Item Value
gene id AMCG00010109
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15085102 ~ 15099005 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010109
CTCCCAACTCTTAGCAGTTTCAACTCAACAAGGACCCTGGTCTGACCCAACCTCTGTCTGTAATAACGCAGGACTTCAAACATGCAGTGGACACTTTcagcattattttatatactatataaCCAATATGGAGGGCTTTGCACTGAATTTTACAATGGAACGGCACAGcagcatacaaataataacagctCTACTAATATTGCAGGTCATAGCCACAGTCTGCAAGGCATTGTCCCGAAAAGGAATATAACAGCATCCCTGAGGCCTGGGAAGCTAATTGGAGACACAGTGACTGGAATATTGCCTGATACCAACAGTACAGTCGATTATAAAGCAACTACTCCGGtgacacagacaaacaatgGCTCCTCAGAAACCAGCAGCTCCAGAACAGTGTTAGATGAGAAGAGGACTCAGAATGAACTGAGAAGAATGACTGTTGGAAACAAACTTCCAGGACAGACATACATCCGAAGAAGCGCCAACAAACCCACCTTTGAAACAGCCAGGggaaaaaattgGTGTGCTTATGTACACACCAGGCTCTCACCCACAATTGTGATCGACCCTGTGGCATCCTACATGCCTGTTGCTACTGAGCCGTGCTACTGGAGTAGTGGGGGCTGCCCTGAAAGGTATCAGGTGATGACTCGTCCTGCCTACAAGATGAGACATACAATAGTCACCTCACTGGAATGGAAATGCTGCCCAGGGTATATTGGCTCACTGTGCCAACCCAATGGTGCACAACTTCTGACACAGCTCAGACGAGTTGAAAGCAACTCAGCCATGAGAACAGCATCGGATGAAAAACAGCAAAGCACCAGCTCTGAATTAGATGAGAAAATGGCCGATCAGATGTCCAGCCAAGAGAAGAAGATCAACATGTTGCAGAAGAAGATGGACAATGTGACCAACAATATGAACAACATGAAGACTGTGCTTTACTCACTAGAGGGGAAAATTAATGAAGGGAAAGGGAAAGACCTGCAATCCACCCTGAAAGCTCTCAAGACTAAAGGAATTCAGGATCGCATAAGAGAAATTGTCCAAGAACAAATCAAGTCTTCCCAAAATCTAATACAAGAAACCATTGCTCAGCTATTCAAGACAATGTCAAGGTTGACAGAAGAACTGGAGAACACCAAGGAAACGGTAAAGCAATTAAATGGAACTATGGCTATAATGTTGGGGTCCCAAAAATCCATTGAagagaacaacaacagaatGGTGACTGACATCCAGGGGCTTAAAGATCAAGCCATTGCTTTAAAAGGTGATATCACCACTTCGAGTTCCAATATAACCAGAGAACTAACTGGTAAATATTACTCCCTAGAGGAAAAATTTGCCCttgaaaaacaagagaaagtAGTTTTCTATGACACCATAAATCACACCCTATCTCAAATAAAAGACATGCAGGGACAGTTAATTTCCGGAGAGGCAATACATGAATCTGTAGTGCTTGAAAGCCAAGGTTCGGAGTCAGAGAACCTCACTAAACATGTTGCTTTTCTTGGTGAcatggttaaaaaacaaacactgctgaTACTGCAGCTCCAGCAGGAAATATATACCCAAGATATTAAGATAAGCAATCTCACCAGTGTCATGGGGAGGCAGAGGAAGGTTGCACAGATGACTTGTGAAACGATGGCTATCCAGTGCAAACAAGATCTACAGCCCCAGCTGGAGGAAATTAAAGGTCATATTAATGTTCTGAATAAGACGCTGTGCGACACAGTCCTGCCGTTGGATGACATGATAAACGTCATGGAAGAAAAGATAAGTCATGTATCTTATGAAGTGGAAGAGCTCAAACCCATCATTGAGAAAGATACATCCATGAGCAGTGATGGAAGGAGCGACCACACCGCAGAGCTCTCAGCCATCAAGAGCAGGATTGAAGGTCTGTCCTCTACCTTAGATGGTCTGAGTTCCAGCATCAAAGATGTGGTGCGAAACCAGGAGGAACTCAACAATCAAACCAAGGATAAAGAAGACCAGTATCTGATTGGATGCCGTGCTGAACTAGAGGATGCTCTTAATGACACCATGACAGTAATTAATAATGCCATAGATTCTGTCAAAGACAATTACTATGGCCTTGAGGGCAACCTGGAAAGCACAAACAGACAGCTCAGTGAAATTTCAAATGACTTTGAGGAAAAACTAAAGAACTCAACAGCTTTGAACCCGCAGCTAGACTACCTGAATTCATCTGTCCTcgcattgcaaaataaaatggagatgCTTGATAACATTCTAGGTGCAATTGGTGTGCTTTCAGAGGATGCTATCAGAGATCCAGAAAAGAAAAGGCCACCTAACCTTGTCCAGCTGTCCCAGATATTGAAAGAAGCGGTCTCCACACTCGAAGAGCACAAGACAACAATCACCCACATAAAAGAATCCCACTCAAATTCTTCTGTAGATTTTGGAACATACGATATACGACTCCAGAATGTTGAATCCAAGGTAAACTTGCTGTTCCCCAATGCCAGCTCTATAGTTAAGCTAAAAAAAAAGCCACCACCTGAGGGACTGGCATGGAAATACAAAGAATTGAACAAGCTGGTACAGGAGCTAAGTGTAAAGTCATTCAACTTGACAAATGACATTTTGTGGGCAAAGGAAAATGCATCGAAAGCTTGGGATGTATGCCAAAATCTGTCCAGGTCAGTGGATATGATGCAGGAAAATGCTATTCAGGGTtgcaaggaagaaaaaataaacctcacTCTTCTCCAAGAAGAACTCAAGGGAATCCTTCAGCAAGACCAAGGAGATATCAGCAAACTAGATGTGGCAAACCCTACACTCTACTTAAGTGCTGCTATGTCCAGCATCTTCAAGGATGTCACAAAGCTTCAAAGTGATGTCAAGCAGCTCAACACAAAGCCAGAAGCGATGCTCGAGCTCATACTGAACGCTAGTTCTGTACTAGCTGGGAGGAgccagagaaacacagacaatgTCATAGAACCAGAGCTGGCCAGCTGCAGCAGCTCCCCCTGTCAGAACGGCGGTACCTGCATCAATGAGAAGAGGGGCTACGTCTGCGCTTGTCGGCCCCCGTTTGGAGGCGTCAACTGTTCTGTCAAGCTGGTCAATGAAAGCGTCCTTTTAAATGATTTCTCCAAAGGCTCTTACCGCTACGCCCCGATGGTCACGTTCTTTGTGGCACACACCTACACCATGAGTGCTCCAGGGGCAATCCGCTTCAATCACCTCTATGTCAACTACGGGGCTTCTTACTCTCCAGGTAGCGGCAAGTTTAGCATCCCTTACTTGGGGGTGTATGTGTTCAAATACACCATCGAGTCAAGCAGCCCACAGGTCTCTGGGTATCTGGTTGTAGATGACGAGGACAAGCTGGCCTTCCAGTCTGAAGATGCCACCGCCACCACCAGTAGTGGCAGAGTTATCACTGGGGATGCGGTACTGGAGCTCAATTATGGTCAGAGGGTTTGGTTACGTTTGGAAACGGGCTCGATCCCTGCAAAGTACCCCCCAGTCACAACCTTCGGTGGCTACCTGTTATACCGCACCTAGGAATGGTATCATGCTGACTAAGGcctaaataaaatcaaacctttgacctGTCGCAAATGACAAATTGTACCTTATCGCATTTTCATTTACACATcttagaaagtggcttctggtTTCAGGTTTCTACCCTGCCCTGCCTTTAAAAATTTTAAACTTATTATCTTTTCCCTGGATAAATACTATTATGGTTTAAACTAAAGCATCTATACCCTTtaagggtaaaataaataaatgaaatgtaatcttgTAATTATGTACCCTATGTGCATAGGCTACATGTTTGTGTATGTCTTTTTAGCAGTGCCAATATATTGTACAGAAATAGATGAACAAATTATGAGAGTTAGGCTACATTAAGTCTTTACTGGTATCCCTCAATGTGATGACTGTAttggaaaacacagaaacacaaactggtaaatttcaatgtaaaaatattgcCACTAGAGGGTACTAGAGGCTTTGACCCAAAACCAAACCTCTGACATttgtcatttctgttttttttacacattgttgaagatttattattactattccaAGATGACACATACAATATCAATTACCTTTTCCTGCACCTGAAGTTAATAAGACGGAGACGATTAGAAACAGGCAGACCGATCTTCTCCACAGAAACACGGGGTGAGCGGGGAAGGGGCCTGGTTGTGTTTAGCACCATCTTGTATTGCAGAGTTCCAACACCTGtcttttgaagaaataaaatgcaacactgaatgtcttcaatttaaaatggaCAGCTGGAAAATGTAAGTTAAAATCTATGGAATCTGAATCTTcccagtgtgcatgtgtgatcctaaagagaaattacacaaaatcagcaggcaGTATCAAGTACATGCAGGTGTACATTTTGATTGCTACatgagctttttaaaatgatctaaTTCTAAACtatgacactttttattttccttttagaatgtaaaataacattgattttTACCTTTATGACACCGAGTGCTCTTTATTTTCGTTATTCTTATTATCTGGAGGAAGGCAATTGTATGAAAATTGGAAAATACAGAACTCATGTCATTGTTTACACATGCTTTAGGGCCCAGTATCTGAAATGCCCCTTCACTGTGTGTTTGCCATCAATGCAATCAGAATGGGATTTCAAATTGGCAACAGTATGAagatatcaaaatgtattaaagcttTTGTTTCCATCACCGCCTGCTTTCTCAGCAGTTCAGTTCCAAACCCCATTTACATAGAGCTACAGTAACATCAGCAGTCAATTAGGCTCCATGGTAACCTATTGCCACTCATTTATCTTCTGCATCCCGTAACAGCTGTGAAGCAGACGTGACAAGCCAAATACAATTCAAACAGAAGGACATGTTCCAGATGTAGCGCTGAGCTGCCAGGTGTTTACTTACAGCTAATTGTTGTTTTACACTTGGGAATTGATCTGTAATGCTGGTGATTTCTGAAATGATACACTCGTTCCgggtttgtttaatttctttgttaTACCCAATAGCGTTATGTACCAGTGccaaaccaaaacagaaaataaaggataAATGTCTCTATTACTACTTTGTATACACCAACTTAGTGAGTTTTTACGATGGCcagtatttaacattttccaaCAATTATTAAGGTAATTGATGTTTACCTTTCAAGCTGACTGTAATCTACTGCTTCAACTCTTGTGCCAGCATAGTTCAACTGAACTCCATAACAATACAAACTGCTAATatacaaccaaaataaaaatacctgaCATGAATAGAAGCATAATCATACACGTATAACAGTGAATGATGCAGAATGTGTCTGATACATTACAAAAGGATATAAGGGATACAGATTTTAGTgcccacagaaaataaatgaataaaatagatGATATCATTCCAGTTCTTCAAAGTTCAAGACAAAGGCTACATTATTCCACTTTATCTCTGTAATGGAATAATACATCCTTTACAAATTGCAGCTGTTGTTTGAGTCAGTCAATAAAGAgatcaaacataaataatgccCTAATGTTGAATAATATATGAAGAATATTTATGGCCCAGTAGGGGGAATTAAATATTCAGGTCATATACAaactctttaaataaaatgtacgtATTATATTGATGGCAAAACAGAATTATTGGGCCACTTGGAGATCTTACAAAGGTCTTATAAATACATATCGTTGACTATAGATTAAAACTTATTAG

Function

GO: NA

KEGG:

id description
K24247 MMRN; multimerin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010109 True 5768 mRNA 0.41 8 15085102 15099005

Neighbor

gene id symbol gene type direction distance location
AMCG00010102 add1,LOC107737461 coding upstream 84346 14978146 ~ 15000756 (+)
AMCG00010099 NA coding upstream 344133 14700320 ~ 14740969 (+)
AMCG00010098 ctif coding upstream 413700 14656485 ~ 14671402 (+)
AMCG00010096 slc20a2,LOC107724891,LOC107602837,LOC107669617 coding upstream 571009 14489911 ~ 14514093 (+)
AMCG00010094 NA coding upstream 637551 14440450 ~ 14447551 (+)
AMCG00010110 NA coding downstream 113000 15212005 ~ 15217546 (+)
AMCG00010111 LOC107735115 coding downstream 340986 15439991 ~ 15442927 (+)
AMCG00010115 NA coding downstream 393618 15492623 ~ 15514695 (+)
AMCG00010117 gldc coding downstream 435992 15534997 ~ 15558177 (+)
AMCG00010124 NA coding downstream 601094 15700099 ~ 15709506 (+)
G77954 NA non-coding upstream 37247 15004034 ~ 15047855 (+)
G77958 NA non-coding upstream 123597 14960272 ~ 14961505 (+)
G77796 NA non-coding upstream 1684906 13399908 ~ 13400196 (+)
G77673 NA non-coding upstream 2870581 12209013 ~ 12214521 (+)
G77670 NA non-coding upstream 2907613 12177228 ~ 12177489 (+)
G78007 NA non-coding downstream 105669 15204674 ~ 15221655 (+)
G78012 NA non-coding downstream 129888 15228893 ~ 15232199 (+)
G78032 NA non-coding downstream 208045 15307050 ~ 15308646 (+)
G78100 NA non-coding downstream 554983 15653988 ~ 15654643 (+)
G78127 NA non-coding downstream 621174 15720179 ~ 15723894 (+)
AMCG00010101 NA other upstream 52921 14991919 ~ 15032181 (+)
G77541 NA other upstream 3384021 11700706 ~ 11701081 (+)
AMCG00010041 NA other upstream 3695857 11289903 ~ 11389245 (+)
G77423 NA other upstream 3929633 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 4771616 10302926 ~ 10313486 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 425441 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 529340 15628345 ~ 15642841 (+)
G78198 NA other downstream 958526 16057531 ~ 16060087 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 1366559 16465564 ~ 16547620 (+)
AMCG00010164 NA other downstream 2121031 17220036 ~ 17225340 (+)

Expression


Co-expression Network