AMCG00010139


Basic Information

Item Value
gene id AMCG00010139
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 16348742 ~ 16353104 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010139
ATGACAACATCATTACACGTCCAGCTGGAGCTGCACTGCGCTAGATTTCAGGAGCAGCGCAGAGTGGACGCAGTTCAGaccagagggagagaggcgcTGATCGCGGACAAGGCAACTTTGCGGACCTCTGCCACCGGAGGAGACACGCTGCCCCGGGCAGACATGACCGACCTGCTGCTCCCAGAGCTGGAGATCGACGTGGAGAGTCTGGAGACGGAGAGCGACGACCAAGCGGAGTTTGGCTGCGCTGCGTCCGGAGCCGGGGACGATGCGCTGGGCTGCAGGGACGAGGAGAGACCCGGTCAGCTCACCGCGGGCTCCGGGGACCAGAGGAAGCTGAGCCGCACCCCGAAGTGCGCCCGGTGCCGCAACCACGGGGTGGTGTCCTGCCTCAAGGGGCACAAGCGCTTCTGCCGGTGGCGCGACTGCCAGTGTGCCAACTGCCTGCTGGTGGTGGAGAGGCAGCGGGTCATGGCGGCGCAGGTGGCGCTTAGGAGGCAACAGGCGACGGAGGACAAGAAAGGACTGACAGGAAAACAGATCCCCGTTGAACGCAGGACAGTTTATCAGAGGCATATTAGGCCCTCTAGTATGCTGGCAAAAAGTATTTTGGAAGGTTATCGTCCAGTTCAGACAGACTCGTTTTTAGGAGGCAACTCGTCCCTGCCTCCCCCTCTCAGTGACCgaatgaggaagaggagggctTTCGCTGACAAAGAGCTGGAGACGATCATGCTGGAGCGAGAGTACAAAGAGCGCGAGTTGCTGGAGTCCAGTCAGGCGGCCGCggcctccctcttcctccccagCAGCATGGTCCACGCGGCCGAGTACAACTCCTACAAAGCGGCCTTCTCTGCAGGGCAAGTGGAGGCCCAGCCCAAGGAGGTGTGCAACTTTCTGCCCAATTGCCTCGACCTGTCGATGCAGTACAGCGGCTCGGGGAACGTGGAGCTGATTTCCTCCAATGTCAGTGTGGCCACCACTTACAGACAGTATCCGCTGTCCCCCCGGTTCATGATGTGGCCGAAATGCAGCAACATCAATGATGCGCTGCTTTACCAGCAGTGCCTCCTGAACGCCACCGCAGTCCAGAAACTGGGGGCCGTGTGGGACCCAAAAATGATGCCAGCGTCGGAGCGCCACTCGCCCGATCAGGATGTGGCAGCGGCCAAACTGGAAGGCTCACGTGCTGCCCCAGAGCTGTGTGACCCCCAGCGAGCGCAGCCTGAATCACAGGGCCTCTCTCAGGGACCGCGGGAGAGGTCTGCCTTCTCCCCGCCCAAGAGGAGCTTCGGACCAGCCTTCGCCAACACCCCGTCGCCGCAGAGCCAAGAGCACGTCTTGAGCAAGCTGAGCAAAGACAGTGCCAAGCATGCCCTCTCCATGAAAGTCAACTCCTTCCACTCCCTGATTCAGCAGACGCTCAGTGAGAAGGCAGGCCCCGAGTCCAAAGCGCCGTACTGCAAAGAGCTGTTCGAAGAAGCAGCTAGAAAATACAGAGAGAGCGCCGCCAAGGAGAACCAGATCTTCAAAAACATATATGCCAAAGACTTGACCTCCAAACAAGGGGCTACAAAGCTTGCATCCAGTGAGtctctgtctttttctgtcGAGTCGATTCTGAAGAGACCTTCCCCTGCAGTAAACCGTGCATCTCAGTAACTTACGACATTTCCATAATGACTTCTTCCAAAAGAGatctttattaatgtatatattttgatatgaaaataatatgtcAGGGGTAAGGTACTTCCAAACACAGCTGGGCAAATACTGTACAGAACacttttatttgaaattcagCTGCTGTTTCTCGTTCTCAACCCCATGCAAATAAGTGGTGTACATTTTCTTTGGCTGTAAATAAATTAGCATGTTTTATATCACtttaatataatgaatatatttaagtGTAATAATGACTGAGGTTGCTTTAAAATTGTTTTGAGTTTTAAGCACTGCAATgtgcaacaatacaataaacaatttaatggAGAAATGTGCTTTGGTGTTTTGATCTGTTTGGTTTCGTTATtggttaaattaattttgatgcAAGAATATTATTTGGAGACAACAGCAAATACAATGTTAATTCTGTATCCCtgttatgtatataaaaaagacgattaaaatgtga

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19489 DMRT2; doublesex- and mab-3-related transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010139 True 2146 mRNA 0.53 5 16348742 16353104

Neighbor

gene id symbol gene type direction distance location
AMCG00010140 NA coding upstream 9161 16335141 ~ 16339581 (+)
AMCG00010141 NA coding upstream 15265 16307230 ~ 16333477 (+)
AMCG00010138 kank1 coding upstream 49148 16284949 ~ 16299594 (+)
AMCG00010136 LOC104932682 coding upstream 134800 16209311 ~ 16213942 (+)
AMCG00010135 dapk1,LOC107557602,LOC102788608,LOC107755715 coding upstream 142404 16153803 ~ 16206338 (+)
AMCG00010145 NA coding downstream 67580 16420684 ~ 16454456 (+)
AMCG00010151 NA coding downstream 369340 16722444 ~ 16732279 (+)
AMCG00010154 NA coding downstream 404698 16757802 ~ 16761758 (+)
AMCG00010153 NA coding downstream 416478 16769582 ~ 16774715 (+)
AMCG00010163 NA coding downstream 834325 17187429 ~ 17193350 (+)
G78129 NA non-coding upstream 613015 15729140 ~ 15735727 (+)
G78127 NA non-coding upstream 624848 15720179 ~ 15723894 (+)
G78100 NA non-coding upstream 694099 15653988 ~ 15654643 (+)
G78032 NA non-coding upstream 1040096 15307050 ~ 15308646 (+)
G78012 NA non-coding upstream 1116543 15228893 ~ 15232199 (+)
G78299 NA non-coding downstream 319382 16672486 ~ 16672909 (+)
G78300 NA non-coding downstream 321005 16674109 ~ 16674619 (+)
G78302 NA non-coding downstream 329813 16682917 ~ 16683174 (+)
G78303 NA non-coding downstream 335681 16688785 ~ 16689872 (+)
G78316 NA non-coding downstream 539125 16892229 ~ 16892600 (+)
G78198 NA other upstream 288655 16057531 ~ 16060087 (+)
AMCG00010119 NA other upstream 705901 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 814655 15524446 ~ 15534087 (+)
AMCG00010101 NA other upstream 1316561 14991919 ~ 15032181 (+)
G77541 NA other upstream 4647661 11700706 ~ 11701081 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 112460 16465564 ~ 16547620 (+)
AMCG00010164 NA other downstream 866932 17220036 ~ 17225340 (+)
AMCG00010160 NA other downstream 892481 17245585 ~ 17247150 (+)
G78396 NA other downstream 921283 17274387 ~ 17277998 (+)
G78410 NA other downstream 991315 17344419 ~ 17353488 (+)

Expression


Co-expression Network