Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00010140 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 16335141 ~ 16339581 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K19490 | DMRT3; doublesex- and mab-3-related transcription factor 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00010140 | True | 1359 | mRNA | 0.58 | 2 | 16335141 | 16339581 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010141 | NA | coding | upstream | 1664 | 16307230 ~ 16333477 (+) |
| AMCG00010138 | kank1 | coding | upstream | 35547 | 16284949 ~ 16299594 (+) |
| AMCG00010136 | LOC104932682 | coding | upstream | 121199 | 16209311 ~ 16213942 (+) |
| AMCG00010135 | dapk1,LOC107557602,LOC102788608,LOC107755715 | coding | upstream | 128803 | 16153803 ~ 16206338 (+) |
| AMCG00010126 | NA | coding | upstream | 346664 | 15986175 ~ 15988477 (+) |
| AMCG00010139 | NA | coding | downstream | 9161 | 16348742 ~ 16353104 (+) |
| AMCG00010145 | NA | coding | downstream | 81103 | 16420684 ~ 16454456 (+) |
| AMCG00010151 | NA | coding | downstream | 382863 | 16722444 ~ 16732279 (+) |
| AMCG00010154 | NA | coding | downstream | 418221 | 16757802 ~ 16761758 (+) |
| AMCG00010153 | NA | coding | downstream | 430001 | 16769582 ~ 16774715 (+) |
| G78129 | NA | non-coding | upstream | 599414 | 15729140 ~ 15735727 (+) |
| G78127 | NA | non-coding | upstream | 611247 | 15720179 ~ 15723894 (+) |
| G78100 | NA | non-coding | upstream | 680498 | 15653988 ~ 15654643 (+) |
| G78032 | NA | non-coding | upstream | 1026495 | 15307050 ~ 15308646 (+) |
| G78012 | NA | non-coding | upstream | 1102942 | 15228893 ~ 15232199 (+) |
| G78299 | NA | non-coding | downstream | 332905 | 16672486 ~ 16672909 (+) |
| G78300 | NA | non-coding | downstream | 334528 | 16674109 ~ 16674619 (+) |
| G78302 | NA | non-coding | downstream | 343336 | 16682917 ~ 16683174 (+) |
| G78303 | NA | non-coding | downstream | 349204 | 16688785 ~ 16689872 (+) |
| G78316 | NA | non-coding | downstream | 552648 | 16892229 ~ 16892600 (+) |
| G78198 | NA | other | upstream | 275054 | 16057531 ~ 16060087 (+) |
| AMCG00010119 | NA | other | upstream | 692300 | 15628345 ~ 15642841 (+) |
| AMCG00010116 | LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 | other | upstream | 801054 | 15524446 ~ 15534087 (+) |
| AMCG00010101 | NA | other | upstream | 1302960 | 14991919 ~ 15032181 (+) |
| G77541 | NA | other | upstream | 4634060 | 11700706 ~ 11701081 (+) |
| AMCG00010144 | adamts3,LOC103134868 | other | downstream | 125983 | 16465564 ~ 16547620 (+) |
| AMCG00010164 | NA | other | downstream | 880455 | 17220036 ~ 17225340 (+) |
| AMCG00010160 | NA | other | downstream | 906004 | 17245585 ~ 17247150 (+) |
| G78396 | NA | other | downstream | 934806 | 17274387 ~ 17277998 (+) |
| G78410 | NA | other | downstream | 1004838 | 17344419 ~ 17353488 (+) |
