AMCG00010144 (adamts3,LOC103134868)


Basic Information

Item Value
gene id AMCG00010144
gene name adamts3,LOC103134868
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 16465564 ~ 16547620 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010144
GAGGCGGACCTCGATGTTCCTGCAGCGCTGGATGGCATTGCAGAGCAGGTGAAGGAGACGGTCAGGAAGCGGAGACACGCGGGCGAAGATGACTACAATATCGAAGTGCTTCTGGGAGTGGACGACTCCGTGGTGCGGTTCCATGGAAAAGAACACGTTCAGAACTACCTCCTCACTCTGATGAACATCgtgAATGAAATCTATCACGATGACTCATTAGGTGTCCATATAAATGTGGTCCTGGTGAGAATGATTATGCTTGGATATGCAAAGTCCATCAGCTTGATTGAAAGAGGAAACCCATCGCGGAGCTTGGAGAATGTGTGTCGCTGGGCATCTGTGCAGCAGAAGGCCGACCTAGAACATTCTGAGCATCACGACCACGCCATCTTCCTGACGAGACAAGGCTTCGGACCCACTGGCATGCAGGGATATGCTCCGGTGACTGGGATGTGCCACCCTGTGCGGAGCTGTACTCTGAACCACGAAGATGGTTTTTCCTCTGCTTTTGTTGTAGCTCATGAAACAGGCCATGTGCTGGGAATGGAGCACGATGGTCAAGGGAACCGCTGTGGGGACGAAACCGCGATGGGAAGTGTCATGGCACCCTTGGTTCAAGCGGCATTTCATCGGTACCACTGGTCAATGTGCAGTGGCCAGGAGCTCAAAAGATACATCCACTCTTACGATTGCCTCCTGGATGACCCCTTTAAACACGACTGGCCCAAACTTCCTGAACTACCTGGAATTAACTATTCAATGGATGAGCAATGCCGCTTTGATTTTGGAGTTGGATACAAAATATGCACATCTTTCAGGACATTTGAACCATGCACACAGCTGTGGTGCAGTCACCCTGACAATCCTTACTTCTGCAAGACGAAGAAAGGGCCTCCGCTGGATGGGACGGAGTGTGCGCCAGGGAAATGGTGCTATAAAGGCCATTGCATGAGGATGAACGCCAACCAGGTGAAACAGGATGGGGCCTGGGGTTCCTGGACGAGGTTTGCTTCGTGCTCAAGAACGTGTGGAACCGGTGTCCATTTCAGAACCCGTCAGTGCAATAACCCAGCGCCCTCTAATGGAGGTGAAGACTGTCCTGGGATTAATTATGAGTATCAGCTTTGTAACAAGGATGACTGTCCCAAGAACTTTGAAGACTTCCGAGCTCAGCAGTGCCAGCAGCGAAATTCACACTTTGAGTTTCAGAATGCCAAGCATCACTGGCAGCCATATGAACACCCTGACTcGAATAAAAGATGTCATCTTTACTGCCAGTCAAAACAAACGGGGGATGTCGCGTACATGAAACAATTAGCACATGATGGAACACGCTGTTCCTACAAGGACCCATACAGCATCTGTGTGCGTGGAGAATGTGTGAAAGTGGGTTGTGACAGAGAGATTGGATCCAACAAAGTGGAAGATAAGTGCGGTGTCTGTGGAGGAGATAACTCTCACTGCAGAACTGTCAAGGGGACATTCACCCGCACGCCAAAGAAAGCCGCGATCAAGAATCAAGCTACAGGGCATTATATTCTGAACGGCAAAGGAGAGGACACCAAATCGAAGACCTTTATTGACCTGGGAGTGGAGTGGGACTACAGCATAGACGACGACATCGAGACGCTGCACACTGAGGGACCCCTGCACGACGCGGTGATCATTTTGATCATACCTCGAGATAATGAGACGAGATCTACACTGACGTACAGATACATCATACATGAAGACTCTGTACCTACAATCAGCAGTAACAATGTAATCCAGGAAGACGCGTATGAGTGGGCACTGAAAAGCTGGTCCCAGTGTTCGAGACCATGTGCTGGAGGCTTTCAATACACTAAATATGGATGCCGTAAAAAGGGAGACAGTAAGATGCTTCATCGCAGCTACTGTGAAGCGAGCAAAAAGCCCAAACCCATTCGCAGAATGTGTAATTTGCAAGATTGTTCGGAGCCACAGTGGATCACAGAGGACTGGGAGCACTGCACTAAAACCTGCGGGAGTTCAGGTTATCATATCCGCACAGTGCGCTGCATGCAGCCTCTTCAAGACGGGACCAACCGCTCAGTTCACAGCAAATACTGCAGCGGCGAGAAGCCCGAGAGCCGAAAGCCTTGCAATAGGAGACCATGCCCCGCACAGTGGAGGACCGGGCCCTGGTCAGAGTGCTCAGTAACCTGTGGTGAAGGACAGGAGCACAGGCAGGTCACATGCCGCATTGGAGACCAGTGTGACGGAGAAAAACCTGAGGCAACGCGGCTGTGCAAACCGGGGCCCTGCAATGATGAACCCTGTACCGGAGACAAGTCGATCTTTTGCCAGATGGAGGTGCTTGCCAGATATTGCTCTATCCCCGGCTACAACAAGCTCTGCTGCGAGTCCTGCAGTAAGCGCAGCAGCAGCACGCTGGCTCCTCCGTTCACGTCAGAAGCAGCTGAGACCGAAGACGACGTCCATTTTGACTCAGTTCCTGAAGTAGCGGCTGCCCACATCTTGGCCTTTTCCTCCTCTGGTAAAAACATGCAGAGCCGTGGCTCAAATGTTACTTCTGCTGGTGACGAGCCAAAATCTACTGATTCTTCCCCAAAGAGAGTAACCCCAACCAGCAGTAAACGTGACAGGCCTCTTTTGAGCCTCCGCACTAGAAATTCCTCCACATCGGCAACTGGTGACCTGCCACCTTCACACAACAGCAACCTGTCGGTGCCTCTGTCGGTCAGGGCCACGGCGAGGAAGGGAGACAGACAGGGTGAGAGGAGGTGGCCTTCAAGATCGTCCAATGTGGAGAGATGAAGTCGAGCGGTCAACCTGAACTCTGAAAGCAGATACCTGGTGGTGTCCTGCGTGTTCAACTTCAGATCATTTATTCGGtttataagaaagaaaaataacaactacgAAAAAGTGCGGGTTCACTTTTGTGTCATTCACGTTCTCCAGCAGCTATTAATTACATTCAGTTTTCCTGCTGTAGTGTATGGAAAAGCACCAAAGATATTGTCAATAAGAGTGAACcgactttctttaaaaaaaaaacttaaaaaaaaacggTTACAAACAATTTGCACATCGACTGAAGCTATAGGAGATGTCACAGTGGTACAAATGGTTCTAGTTATATAGAATTGGAttgagttaaaataaaataactcatCTATATGGTTGAAAAAAATCAGATATTTATAAACCTTTGTAGCTATCCTGTAAATAGTGTATATGCAAAGtgtcagtattattttttaaagaaggcaagcttttcttttttatttatgtcacaTGGACATTTCCTATCATATACAAAACCAATTTGCAGTGTCTCTTCGATTTCCTCATGTTCATATTGATTATAGAAAGTATAAATGCAATACcacttacatttacattcttattttataaatggtGCTGGTTTAAACAGAATTGTCTTATACAAATCTGTATAATTCGTGGGTATGGTCTATCATCTATCATGATAGTATACCTGACAACTGAACTGATAAAAATTCAAATATAGCATATAAGCTTTATGGGGGTATTTTGAACAAGTGAAGCTGGACTTACAAAGGCCATTATGTAGAACATATTGTGTAATATGTCCTTCATTACATCTGAAAAAAGGGTTGagagctatttattttaaaggcgATTATCACAACCACAATGCATCTGACTGCAATAGcaagattttttattattttctgttgttttcacagCTCATCCATTCATACTCTCTCCTGTGTGTTGATGTCTAGTACTTGTATATAGGATTGAGgacttaaaatatttattaaatgtcaaTAGAATATTGTAATAAATCTGATCATTAGTAGCAGTGACTAAATATTTGCCATTTGCCATTTCTAGAAGGCCAGATCATTGTAAcggttttcttttaatttaaattgaattcataAACTAAAACTAAGAAACAAAACCTCTACTGTAGCTAGGAATCATTTCTAAATTGAAAAATCTCGACAATGTTTTCAACAAGCATTCTAGGAACGGAGTAGtttactaaaacaaacaaaaacttgccCACAGTTTGTGGGTGTTTGTCCCTGACAAAGCTGTTCATTACAGCAAAAGTAGCACTAAATTAACATTGAACAACACTGTTTTTATCACAGTGAAACATAGCACTAAGTGAAATTAGTTTTAGGAATTGTGTtaaacattgaaacaaataaatgtatgactTCCCCTGGAAAACTGGGCTAGGTAACACTATAGAGCTAgatgtatatagtgtgtgtagtTATCTGTCAACTAACTGTGTTGAAGCACATAGTGCTATGCTACATGCATTTCTGTCCTTGTTTGTAATGTTACCTGTTGACTTGCTGCCTCTAAAGAATTGCTGCTAATTTATGCAAGGCTTTCATTGGTCAAAGAGAAGCTAGATTTTATATTGACAATCCCTGAGCCTCAAACAGATATAGagaatgttatttatgtatctcCAGTACTCCCCATGCATTAAAGTATGAAGGCTAAgagcatttcctttttttgtgtgtgcttcttttttcaccatttagatgtattttaagtgtACACTACTGATGCTGTTTGTTGTATTGGGGAGCACATAGCAATAAAGAATAAACTTTCTTAGTctattatcattgttgttggtgatgttattgttttgatgtCTTCCCATCTCGTCTCTTTTTTGTGACACTTGTAACTCAATGAATGGGGCCTTGCGTAATGT
>TU97635
agaaattgaacaggtgttcctaataatcctttaggtgaatgtatatagtgtgtgtagtTATCTGTCAACTAACTGTGTTGAAGCACATAGTGCTATGCTACATGCATTTCTGTCCTTGTTTGTAATGTTACCTGTTGACTTGCTGCCTCTAAAGAATTGCTGCTAATTTATGCAAGGCTTTCATTGGTCAAAGAGAAGCTAGATTTTATATTGACAATCCCTGAGCCTCAAACAGATATAGagaatgttatttatgtatctcCAGTACTCCCCATGCATTAAAGTATGAAGGCTAAgagcatttcctttttttgtgtgtgcttcttttttcaccatttagatgtattttaagtgtACACTACTGATGCTGTTTGTTGTATTGGGGAGCACA

Function

symbol description
adamts3 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Hennekam syndrome. Orthologous to human ADAMTS3 (ADAM metallopeptidase with thrombospondin type 1 motif 3).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08619 ADAMTS3; a disintegrin and metalloproteinase with thrombospondin motifs 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010144 True 4723 mRNA 0.44 17 16500835 16547620
TU97635 False 391 lncRNA 0.36 2 16465564 16547492

Neighbor

gene id symbol gene type direction distance location
AMCG00010145 NA coding upstream 11108 16420684 ~ 16454456 (+)
AMCG00010139 NA coding upstream 112460 16348742 ~ 16353104 (+)
AMCG00010140 NA coding upstream 125983 16335141 ~ 16339581 (+)
AMCG00010141 NA coding upstream 132087 16307230 ~ 16333477 (+)
AMCG00010138 kank1 coding upstream 165970 16284949 ~ 16299594 (+)
AMCG00010151 NA coding downstream 174824 16722444 ~ 16732279 (+)
AMCG00010154 NA coding downstream 210182 16757802 ~ 16761758 (+)
AMCG00010153 NA coding downstream 221962 16769582 ~ 16774715 (+)
AMCG00010163 NA coding downstream 639809 17187429 ~ 17193350 (+)
AMCG00010168 NA coding downstream 703627 17251247 ~ 17261003 (+)
G78129 NA non-coding upstream 729837 15729140 ~ 15735727 (+)
G78127 NA non-coding upstream 741670 15720179 ~ 15723894 (+)
G78100 NA non-coding upstream 810921 15653988 ~ 15654643 (+)
G78032 NA non-coding upstream 1156918 15307050 ~ 15308646 (+)
G78012 NA non-coding upstream 1233365 15228893 ~ 15232199 (+)
G78299 NA non-coding downstream 124866 16672486 ~ 16672909 (+)
G78300 NA non-coding downstream 126489 16674109 ~ 16674619 (+)
G78302 NA non-coding downstream 135297 16682917 ~ 16683174 (+)
G78303 NA non-coding downstream 141165 16688785 ~ 16689872 (+)
G78316 NA non-coding downstream 344609 16892229 ~ 16892600 (+)
G78198 NA other upstream 405477 16057531 ~ 16060087 (+)
AMCG00010119 NA other upstream 822723 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 931477 15524446 ~ 15534087 (+)
AMCG00010101 NA other upstream 1433383 14991919 ~ 15032181 (+)
G77541 NA other upstream 4764483 11700706 ~ 11701081 (+)
AMCG00010164 NA other downstream 672416 17220036 ~ 17225340 (+)
AMCG00010160 NA other downstream 697965 17245585 ~ 17247150 (+)
G78396 NA other downstream 726767 17274387 ~ 17277998 (+)
G78410 NA other downstream 796799 17344419 ~ 17353488 (+)
G78743 NA other downstream 2372291 18919911 ~ 18921444 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1026031 NA non-coding NC_048575.1 CM023229.2 84226393 ~ 84235238 (-)