AMCG00010164


Basic Information

Item Value
gene id AMCG00010164
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17220036 ~ 17225340 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010164
CACAAGTAGAAGAATGGTCATGAGCTACTAAAGTTATAATTGAAAGAGGGTCAGACAAGAGGAGCTAGCATTTGTGCAGGACTTAGAGACAAGGCACAGCACTAACAATGAACTGCAAAGCAACGATCACGACCTTCGCACTCTTGGCAGCATTTGCCGTATTATCAATAGATGTACCTACATCTAACATGCGCTGTAAGTGCATCAAATCCTTTTCTGCTTTCATTCCACCAAAAACAATGAAGAGAATTGAGAAAATCCCAAAAGGAGTGCACTGCAGCACTGTTGAAATTATAGCACATCtgaaatcagattttaaaatctgcttGAATCCTCAAGCTAAATGGGTGAAAATGTTGATTAAAGCCTTTCGGAAAAGGACGAATGGCCGGCGATGCTGAACGTTGCTTGTGCCCTGGACAGCCCCTGAAGTTCTTGAAGCCCAGACTGATCAAAACTTTCGATGTTTTTTCACCAAGTCCATCTTGTGCAAATGTTGAGATCGTTGCAACCTTAAAGAAGAGTGGCAAAAAGATATGCCTTGATCCATTTGCTAAACAAGTGAAGCAAATCCTGGCTAGTAAAAGaagacCAAAGAAACCGAAAAGAAAGCAAGGAAAggggaagaaaggaagaaaaccTTGAAAGACACAATAAATGTTGTGTATCAGGTTGCTAGTTATAAAATGATTCACAAAAGTGCAACCACTGTACCACTGTAATGATGGTAccctaataaaaaatataaaaagca
>TU97781
CACAAGTAGAAGAATGGTCATGAGCTACTAAAGTTATAATTGAAAGAGGGTCAGACAAGAGGAGCTAGCATTTGTGCAGGACTTAGAGACAAGGCACAGCACTAACAATGAACTGCAAAGCAACGATCACGACCTTCGCACTCTTGGCAGCATTTGCCGTATTATCAATAGATGTACCTACATCTAACATGCGCTGTAAGTGCATCAAATCCTTTTCTGCTTTCATTCCACCAAAAACAATGAAGAGAATTGAGAAAATCCCAAAAGGAGTGCACTGCAGCACTGTTGAAATTATAGCACATCtgaaatcagattttaaaatctgcttGAATCCTCAAGCTAAATGGGTGAAAATGTTGATTAAAGCCTTTCGGAAAAGtAAGAAGGAGTCAAATGGAATACTGAAGACCAGAATCTAAATGAAATTGGACgcagcttttttgttgttggatgctttgaaaaatatcagattaataataagcaaatttattttcacacttctCTCTTAAAAAATAGCATGCCCTGTATTTAAGCGATCACAGCCCTTAAGCTCAGATATAACCTATCTTGCTATCCTGATATGATATATATTCCTTTAACTTTTGTTGTGTTATAATTGTGTAGGGCTGcccttaattatttaaaaaccctaagtgggaataaaaaataagcCAGACATTATATGTCTAAAGCCTATAGcacagtattatatattttgatatatttacagTTGTCCAGTAGATAGACATTTTTCaagaattaaaatcaattattctttctaaatatattttatttcaattttgtatatcacccaaataaaatatgttgtattttcaataaattatgTGAAACGAAA
>TU97783
GTTGAAGTCaggtctgtttctctctcatgGCTTAAACATGCACATCATAACTGTGTTTCTGCTGTGCACTGGACTTTCTTGGGTTGCATTGACTCAAGGACGAATGGCCGGCGATGCTGAACGTTGCTTGTGCCCTGGACAGCCCCTGAAGTTCTTGAAGCCCAGACTGATCAAAACTTTCGATGTTTTTTCACCAAGTCCATCTTGTGCAAATGTTGAGATCGTTGCAACCTTAAAGAAGAGTGGCAAAAAGATATGCCTTGATCCATTTGCTAAACAAGTGAAGCAAATCCTGGCTAGTAAAAGaagacCAAAGAAACCGAAAAGAAAGCAAGGAAAggggaagaaaggaagaaaaccTTGAAAGACACAATAAATGTTGTGTATCAGGTTGCTAGTTATAAAATGATTCACAAAAGTGCAACCACTGTACCACTGTAATGATGGTAccctaataaaaaatataaaaagcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010164 False 754 mRNA 0.40 6 17220036 17225338
TU97781 True 856 lncRNA 0.33 4 17220036 17222106
TU97783 False 475 TUCP 0.41 4 17223882 17225340

Neighbor

gene id symbol gene type direction distance location
AMCG00010163 NA coding upstream 26686 17187429 ~ 17193350 (+)
AMCG00010153 NA coding upstream 445321 16769582 ~ 16774715 (+)
AMCG00010154 NA coding upstream 458278 16757802 ~ 16761758 (+)
AMCG00010151 NA coding upstream 487757 16722444 ~ 16732279 (+)
AMCG00010145 NA coding upstream 765580 16420684 ~ 16454456 (+)
AMCG00010168 NA coding downstream 25907 17251247 ~ 17261003 (+)
AMCG00010162 NA coding downstream 68727 17294067 ~ 17303416 (+)
AMCG00010161 NA coding downstream 79640 17304980 ~ 17311881 (+)
AMCG00010167 NA coding downstream 90205 17315545 ~ 17317008 (+)
AMCG00010166 NA coding downstream 91833 17317173 ~ 17334410 (+)
G78334 NA non-coding upstream 157124 17054873 ~ 17062912 (+)
G78316 NA non-coding upstream 327436 16892229 ~ 16892600 (+)
G78303 NA non-coding upstream 530164 16688785 ~ 16689872 (+)
G78302 NA non-coding upstream 536862 16682917 ~ 16683174 (+)
G78300 NA non-coding upstream 545417 16674109 ~ 16674619 (+)
G78381 NA non-coding downstream 1551 17226891 ~ 17228845 (+)
G78385 NA non-coding downstream 13710 17239050 ~ 17241485 (+)
G78392 NA non-coding downstream 29882 17255222 ~ 17255429 (+)
G78529 NA non-coding downstream 294927 17520267 ~ 17520854 (+)
G78546 NA non-coding downstream 569100 17794440 ~ 17845546 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 672416 16465564 ~ 16547620 (+)
G78198 NA other upstream 1159949 16057531 ~ 16060087 (+)
AMCG00010119 NA other upstream 1577195 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 1685949 15524446 ~ 15534087 (+)
AMCG00010101 NA other upstream 2187855 14991919 ~ 15032181 (+)
AMCG00010160 NA other downstream 20245 17245585 ~ 17247150 (+)
G78396 NA other downstream 49047 17274387 ~ 17277998 (+)
G78410 NA other downstream 119079 17344419 ~ 17353488 (+)
G78743 NA other downstream 1694571 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1861989 19087329 ~ 19087754 (+)

Expression


Co-expression Network