AMCG00010177 (gtf2h2c,LOC100196672,LOC103032811)


Basic Information

Item Value
gene id AMCG00010177
gene name gtf2h2c,LOC100196672,LOC103032811
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17434441 ~ 17440347 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010177
GCTGCGGAAAAGGCGGAACCCGTGCTGTCGCCGCTGTTTCCGGGGACGCGTGTCGGGGAGCACTGCTCACTTCCGGCTCtggcagtgtgtgtggtGGAGGTCCTCAAAGAAGACGAGTCTGGATCGCTCAAGGCAACCGTGGAAGATATCATCTTTAATGCGAAAAGGAAAAGAGTCTTCGACAGGCATGGGCAGGTCAGGCTTGGGATGATGCGTCACATGTTTGTGATTATCGACACTTCGAGGACAATGGATGACCAGGATTTGAAGCCTAATCGACTTACATCTACCTTAAAGCTCATGGAGTATTTTGTAGACGAATACTTTGACCAGAACCCAATCAGTCAGATAGGGATCATCACCAGTAAGAACAAGAGGGCAGAGAAACTCACAGACCTGGCAGgGAACCCAAAGAAGCACATAGCTGCCCTGAAGAAGGCAGTGGACACAGTCTGTGGTGGGGAACCCTCCCTGTATAACTCCCTCAGTATGGCAATGGAGACACTGAAGCACATGCCAGGCCATGCCAGCAGAGAGGTGCTAGTCATCTTCAGCAGTCTGACCACCTGCGATCCGTCCAATATCTATGAATTAATAAAGACTCTGAAGACACTGAAGATCCgtgtgtctgtgattggcttGTCGGCGGAGGTGCGGGTCTGCACTGTCCTCACACGGGAGACCGGCGGGACGTATCACGTGATCCTGGATGAGAGCCACTTCAGAGAGCTGCTGACGTACCATGTGAAGCCCCCCCCCGCCAGCTCCTCCTCCGAGTGCTCCCTCATTCGCATGGGATTTCCTCAGCACACGATTGCTTCCCTGACAGACCAAGACTCGAAACCATCGTTCAGCATGTCgcACCTGGACAGCAGCAGTGGGCCGAGCCTGACCTTGGGCGGCTACTTCTGCCCTCAGTGCCGGTCCAAGTACACAGAGCTGCCAGTGGAGTGCAAAGTCTGTGGCCTGACGCTGGTGTCTGCACCACACCTGGCCAGGTCCTTTCATCACCTGTTCCCTCTAGATCCCTTCCCAGAAGTGCCTTTAACAGACTACAAAGGGGAAAGGTTCTGTCATGCGTGCCAGGGTCAACTTAAAGACCAAAAGGTGTTCAGCTGCCCCAcgtgctgcagtgtgttctgTGTGGAGTGTGACCTCTTCATCCACGACTCTCTGCACTGCTGCCCCAGCTGCATTCACAGCCAGAGTGCCCCC

Function

symbol description
gtf2h2c Predicted to enable zinc ion binding activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Located in nuclear speck.

NR:

description
general transcription factor IIE, polypeptide 2-2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03142 TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010177 True 1215 mRNA 0.54 15 17434441 17440347

Neighbor

gene id symbol gene type direction distance location
AMCG00010175 NA coding upstream 3312 17419613 ~ 17431129 (+)
AMCG00010173 NA coding upstream 16235 17409064 ~ 17418206 (+)
AMCG00010174 ak6,zgc:86811,LOC107592327 coding upstream 27536 17403555 ~ 17406905 (+)
AMCG00010165 NA coding upstream 57503 17363171 ~ 17376938 (+)
AMCG00010166 NA coding upstream 100031 17317173 ~ 17334410 (+)
AMCG00010176 NA coding downstream 15121 17455468 ~ 17465089 (+)
AMCG00010187 LOC107713368,LOC106565090 coding downstream 226389 17666736 ~ 17701501 (+)
AMCG00010186 NA coding downstream 272768 17713115 ~ 17724874 (+)
AMCG00010185 NA coding downstream 298787 17739134 ~ 17774687 (+)
AMCG00010184 rusc2,LOC107595920 coding downstream 360376 17800723 ~ 17821178 (+)
G78392 NA non-coding upstream 179012 17255222 ~ 17255429 (+)
G78385 NA non-coding upstream 192956 17239050 ~ 17241485 (+)
G78381 NA non-coding upstream 205596 17226891 ~ 17228845 (+)
G78334 NA non-coding upstream 371529 17054873 ~ 17062912 (+)
G78316 NA non-coding upstream 541841 16892229 ~ 16892600 (+)
G78529 NA non-coding downstream 79920 17520267 ~ 17520854 (+)
G78546 NA non-coding downstream 354093 17794440 ~ 17845546 (+)
G78607 NA non-coding downstream 535827 17976174 ~ 17977305 (+)
G78635 NA non-coding downstream 618372 18058719 ~ 18077267 (+)
G78682 NA non-coding downstream 1010143 18450490 ~ 18450809 (+)
G78410 NA other upstream 80953 17344419 ~ 17353488 (+)
G78396 NA other upstream 156443 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 187291 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 209101 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 886821 16465564 ~ 16547620 (+)
G78743 NA other downstream 1479564 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1646982 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 1697656 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 2164271 19604618 ~ 19629439 (+)
G79382 NA other downstream 4605771 22046118 ~ 22047542 (+)

Expression


Co-expression Network