AMCG00010184 (rusc2,LOC107595920)


Basic Information

Item Value
gene id AMCG00010184
gene name rusc2,LOC107595920
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17800723 ~ 17821178 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010184
ATGTTTCCTCAAGATCATGACGATCTCTGTACTATGATTTGCTGCATCCCGTCGTCCCGAGGGCTTCGCAGTCTGGATCCTGGCGCTTGGTTTGTAATCTAGAAtccccccatcccctcccccAGAGAGAATGGACAGCCCCCCCACACTGTCAGGGGAGACCCTCATCGTCCATCACATCCCGCTGGTGCATTGCCAGGTCCCGGGCAGGCAGTGCTGCGGTTCTGTCAAGAGGGCCAGCCCCTTCTGCCAACCGGACCTGGGCCTGACACGCACCACGTCCCTTCCCGAGCGAGATGTTCTGCACAGGGAGGCACTGGTGTACAGTAGCCTGATCCAGACCTCCAGCGGGGGCGGGGGCGGCAGGGGTGGCAGCAGCCTGGTCAGCGACTCCTCCTCCTTTACCTCCTCTAACAACTCTGAGGAGCCGCCCCTGCCTCCTCGGCCCAAGAGCAGGGACACCACAGCCAAAGCCAACCCGCAGCGGCACAACCCGTTCCTCCTGAATgcggaggaggacgaggaggacgaTGAAGACTGTGATGATGCAGACAACCTGAATGGCTACCTGGAAGACTGCTCCTTTCATCTTCATGGGAACACCAATGCCCCCGGCAGCAAGACTTCTTCCTTCGGCCTGCATGATTTGGCCTTCGCCCCTGAACCATTCCTGCTGCATGACACGCTGGGAGGCGTTCACAAGACATGGTGCACCGTGACTGGCAGACCAGGTATAGCCGAGGGCCAGGAGGGTGGCAGGACCGTGCACAATGCGGGGGCCCTTAAGACAGCGACACGGCTAGCAGGTTGCCTGGACCTCTCCGGGTTTGAATGCCAGCGGAGGCACGGCAGCAGTGGCTCCACCCTGTCCATGGATTGCGGAGAGCAGGAGTGGATTGGGAGTCCcactgaggaagaggaggaggacccGCTGAGGAACGGCCGTCGGAGCCGCATTTGcagctgctgctccagctcGGACTTCCCCCTGCCGCCAGGACCGGCCCACCGTTGCTGCTGCTACAGCTTCTCGGACCCCTCAGAGAACACGGACCACCAAATGGGCTATGTCAGCGACTCCTCCTGCAACAGCTCCGACGGGGTGCTCGTCAACTTCAGCGCCATCTACAACAAGATGAACAACGGAGGCCCCGCCAAGCCCCTGAACCTCAACTCCGGGGACCAGTCCTGCACCTCCTCCGTCTGCAGCCACCCGGAGGCAGGGGGCGCCTTTTACCTGGACCTGCACACCTCTCCCACTGAGCCCCGGGGCGGCACTTCCACCTCCCAGGATGGCAACACTTGCAGCTGCCAGTCGCCCCAGGCCCTGGACGCCAACTGCAACTCGTACCACCTGCACTGCGAGGGTGGGCCCTGCCTCTCCGAGACCTCGGACCTCACTTCCTGCTTCCAGAGTCAGGCACGGCTCGTTGTGGCCACTCAGAACTACTACAAGCTGGTGACCTGTGACATCTCCTCTCAGTCGTCCCCCAGCCCAGCAGGATCCTCCATCACCAGCTGCTCAGAAGAGCATGTCAAGAGCAGCCCCACCCAGCCCACAGAGTATTACCTGTTCAGGAAGCCAGAGGACCAAGAGGAGTCCAACGAGCCCGCGGAGGAAGAGGCACAGCAGCAGGAGGAAGAGACGGAGCTGTGTCTGGAATCCCGGAATGTCATCGAGGGGCAGGTGTACATCAACGTGTCTCCTCCTCTGGGGGGCAGCGAGGGCAATGTAGTGGGCCGTCCGCGCTCCCGGAGCTACGATCGCAACTTGGACAAGTCCCCCCCACCACGGCTGGGCTCCCTGGAGCGCATGCTGAGCTGCCCAGTGCGGCTGAGCGACACTGCACTGCGGATCTCGCCGCCCCCCCGTGTCACCTCCTTCGCGGAGATGGCCCGCAGCAAGAGGAAGAGTGGCAGCCTGGGAGGGGGCACGCCACCCCTGAAGACCAGCTCCGACTCCTCATCCCAGGATTTCTCCCCCGTCCCGGAGCTGCGCCATTTCGGGGAGAGCCACAGCCTGCCGCCCATGCCCTTTACGCGCTGCTACAGCCAAGGGAGCTGTGACGTGACCCCACACAGCAGCTCCCCCGACCCCCAGCCCCTGCGAGACTCGCCCGGGGCCTCCAGGGAGACGCGCAGTAAAGCTGAAGGAGTCTGTTCAGATGGCCGCCCAGTGGTGCGCTACAGCAAGGACCAGCGCCCGACTACCCTGCCCATCCAGCCCTTCATCTTCCAGCACCAGCTGAGCAAGCAGCCCAAGCTGCGCCCGCTGCTGAGCGACTACGTCAGCCAGATGTACAGCCGGCCCAGCGGGCAGCCGGCACACGACCGGGGCTCCAccagagagggggaagaggagggcggagagagggaggcagatgAAAACAGGGCGAAGAAAACAGGCCCGAACACGGTGCGCCCCTCCCCTCTGGGCAGCTACTCCCCTGTCCGCCACGGGGCGCCCAGTTCTGAGACCTGCTCCACCTGCACCCCAAGTCCAGACCGGGGGCACAGCGCTGTCCAGCCACCACGCAGCCTGTCCTGCCCCCTGTCTGCCAGTCTCCTGCCTGTCCGCCCATCCCCCGTGCCCTGCGTGCTGCCGCCCACTGATGCCAGCCAGGCCGTGGAGCTGAGCAGGGACTGCCTCTCCAAGCAGCTGCAGCAGGCCACGCCACCCCAGGCCCTGAAGAAGGAGCCTCCCAGTTTCCTGCCAACCATCTCCGGGTACAGCCTCCACCGAAACTCCCTGCCCACCCTGCCCACGGCCGGCTTCAGCCCGCTGGGACACCTAGAGCCGGCGCAGAGGTGTGGCAGCAGTGACGGAGTCCGGGCCAGTGCGCAGACCTGTGTGGCCGCCCGTCCACCCAACGCAAACCACCTTTCCCCTCAGGCCCTTAAGTGGCGGGAATATCGTCGCAAGAACCCGCTTGGTGTGGAGCGGGTGGCGGGCGCCCCTCTCTCCGGCAGCTTGGACACCAGGAGGCCGGAGGGCAGACTGACCCGCCGCAATGTGTTTGACTTCCCAGTCTCTGCCAGCCACGCCCATGCCAGGCAAAACGGCCAGTCTGTGAAGCAGCTGCAGAATTACTACAGCGACTTCTTCCCAGACTACTTCTCCCTGACAGAGAAACCACCCGAGGAGTTCTGTCTGTCCCCCGACGCCGCGACCGAGTCCGTCTCCATTGACCTGCTGCAAAAGAAAGGGCTAGTAAAGGCCATCAATACAGCAGTTGACCTGATAGTAGCACATTTTGGGACCAGTCGAGACCCTGGAGTCAAGGCCAAGTTGGGCAACAGCTCTGTGAGCCCCAATGTGGGTCACCTGATCCTCAAGTACCTGTGTCCAGCCATGAGGGAGGTGCTGCAGGACGGACTGAAGGCCTACGTGCTGGACATGATCATCGGCCAGCGCAGGAACGTGCCCTGGAGCGTGGTGGAGGCCTCCACACAGCTTGgcCCATCCACTCGTGTGCTGCACAGCCTGTATTCCAAAATCAGCCAGTACTCTGAGCTCACGAGCCACAGGATGAGGTTCAACGCATTCATCTTCGGCCTGCTCAAtCTGCGCTCTCTGGAGTTCTGGTTCAATCATCTGTACACTCATGAAGACGTCGTTGCTGCGCACTACCACCCGTGGGGCTTCCTGCCGCTGTCTCAGGGCGTGTGCCAGCCACTGTTCGAGGAGCTGCTCCTGTTGCTGCAGCCGCTGTCTCTGCTGCCCTTCGACCTGGACCTTCTGTTTGAGCCGCGGCTGCTGCAGAAGGGCCAGGAGCAGCTGCGGCGCAAAGAGCAGCTGTGCTCTGCGGGTCAGGGCCTGGAGCAGTCGGTGCGCTCCACCTTCCAGCTGATGAGGGGCTGGGGCACCGTGCCCACGAGAGAGGGGCTGGAGCCCAGGAGAGACGGGGCGAGCAGTGAGATGAAGTGGGGCGCGTTGAAGGACGAACCTAAGGGAAGTGAGGCGGAGCCAGCAAGAGAAGAGAGACTGGAGAGGAGGTTGATGGGAGCTGGGGCGGAGTCGTtgagagagagtggaggaggaggcggcAAGGGCAGCATCACGCAGAGGGCGAAGGGAGTCGGCGGGGAGTCGTGGTGGGAAAGAGAggaaggagaaagggagaggaggaaggagagggacCAGCCCCTGTCTGAGGGGACCAGACAGAGAGACCGGCAGGCGGGCTGGTGGTACCAGCTGATGCAGAGCTCCCAGGTCTACATCGACAACTCGGCCGAGGGATCCAAGTTCGTCAAGtgggagaagaggaagaaggCGGCCGGGGAGGCCCAGGCCTCCCGGGGGCAGGACGTAGGCCGCAGACAGGCCCAGCCGCCCCCTCGGGTAGGAGTGGTGGAGGGGGCAGAGGCCAGTCAGGACACAGAGGCCAGGAAAGGAGGCCGTGGAGAGCTGAGTGCCGGGAGTAAAGGGAAGCCATCCTGGATGGGCAGCCCTCCGGAGTCTGTGCTCAATGAGCTCAAGAGGAGCAAGGAGAAGGAGCCGGAGACGCTGGCATCGGGTGGACGGCGCGGGTCCCAGGAGGAGGGGGCCGCAGACGGGGCCGCTCAGGGGCTGCGCTGGGGGAGGCTGTTTGGAGCCGGCGTGGGCTCCCCCGTCCGGACGCAGAGGGCAGAGCGGGCTCAGAAATCCAGGCTGCCGTCAGGATGGCTGAGTTTGGACAAGTCTGTGCTGGACCTGATGGCACAGACGGTGGGTGCGGGGAAACTGTGGGACCATCCTCCACAGCTGCAGAACACCCCCCCTGCCAGAGAGCACAGTCCAGCACCGCATCACGAAGCAAAGGACTCCAAGCAGCTGGCGCTGtgGGAGGTGCGGACGCTGTGCCACCACATTGCCACGGAGCCGGGCCACCTCAGCTTCAAGAAGGGCGACGTGCTGAGGGTGCTGAGCCGAGCCGAACCCGACTGGCTGTACTGCGCCCTGGGGCACAGCTCCGGCCTGGTGCCCATCATCTACGTCACCCTGACCGAGGAGTCGCATGGCAACTGAACCACCCAGGAGGCTTGTGGGGTGGACTGGGGTCAGAGAGGGGCCTAGATAacaacacccccctccccacccaccAGACGCAAACCCTCTTCTCTGGCCACCGACCACTGGAAAACACTCACAACctcacacacgcgcacacacactcgcacagacaaacacacacacacacacacacacacagtgcgtAGGGAGCACTGGAACTCGGCATCTACAGACTGACTCCAGGTCATTAAACAGTTAACGATACTTTCTGCTATATCCGTCAATCTATATCTATACCTATACCTATATCCAATCTGTGTGTATCTTAAGGCGGAAGATAGAAGGAGTGTCACAAAGGAAACTAAACTTGTTCATCATCTTCAAAAAGAGGCCTGTAAAGTCCTTTGACATGTGCAGCATGGGACGGGACAGAGGACAGGAAATAGGGACACATTCTATAAGGGACAATACTAAGCATGGCACTTTTCTAACAAAATGCTTTCTTTCGGTACATCTGCTATACACCCAAGTGTATCATCTATAATGTCCTCGCATGAGGTGAAAAATAACATGGAGTGAAGGTTTGTTCGTCGAAATGAGATGCATCCTACGTCCCTTACAGTTGAAAACACACTTTGCTAATCGAATTCACTACAAGCAACTTCTCCGTAAAACATGAGTCGCTCACGTCGAATTCACCAAACCAGACCCACAGCACACGGCACAATCCGGAATCACAGTTACATTGACCGTTTAATTGTACTCTTAAGGGAAGTCACAtcactgcacatttcagaggaTTTTACAGGTATCTGGTACCTTTTTAGCTGAGCTCAttcgtttttgttttgacaCAGTTTCTTAACCGTAGttaccctgtgtgtgtgtgttcacgcTTTATTCCTTTCCTGTCAATGGGGGacgaatacaaaataaagtattacaaGGTAGAGTTTTCAATCTAGAactaacaatacatatttatgaggGGTTTTAATGCGGATTATTTAAAGCTGAGTCAATGTGTAAAGTGAAGATTGGCCTTAAAACAGCATTGAACAACTGCTCTAAAATGTGGACTTGCCTCTGGTTTAATCATGCTCTATTAAAACCCCTTATTGTTAAGCCATATGTAAACCCTGCGGAAGTTCCAACGTTTTCTGTTTTCCAAGTCGTTGATGAGAACAATCACACAAGTGGGTTTCGGTCGGGAAGACGAAAAAGCCGCCTTACGTTGGCCGTACGAACGTTATCTTGAACTTTTCTACGGCGATTAGAAACGGACTTGACTGGCCAGCGTCCGCTCACAGACTCCACCCCGTTTGGACCACGGGTGGAGGAGGTGGCTGACTGGCTCTGGGCAGGGGAGGGCCCTGGTGGCACTGGAGTCTGTGCATGTGTCCCCATAGCAAACATTGCACCCTTCAAATgccccccatccctccctccctcctcccagTGCATTTATTCGATGGACTTTGGACACGGCATAGGTGCGGGGACTGGAGAGGATAAATACAAGaatctatataaataatatgtgttgcatttaatttatttatgaagtactGATGTAACTTATTCCGGGTAGTGTATAGCTGCATAGTGACGTGCAGTAACAAAGTTGAGGATGTAAAGGAAAGCAGGTGAGCCCAGGGGAGGCATGACCGAGGGAAGATCGATGCTCTGACTTCTCTCCACACCAGTGGCTAGTGGCAGGACACCACAAGTTCTGCGTAGGACCCTCACAGGTGTGTTTAGGTTTGTGGTCTGGAACAGGGTGGCAAAAGTATAACACGTTCACTGATCCTACAGTTTCAGCTTCTGTTCAAGAGGCACAGATTAATTTCCGAGTGAAATGGCATGGAACACTTAGTGTGTTCACCACCAGCTGTCAAGTACACgtataaaattgtttttatttatttaagtttgcaCATTTGTTCCTCATTCACCTTAATTGGAAGACTTTATTCCTGATTTGTcctgtataaaaatgtatagcaGAGGTGCCATATCTTTAGGTGCCAAAACACTTACCCAACCAGGTGCAttgtctttataaatgtgtaccTGAAGTGTGCACTAGTGCCACATCGTGGGGACAATTCAGATTGTAATGTGGCCTTAAAATTTCGATGTGTCCAGTGAACGTCTTGAGATGAAGAAACTTCcaaattgtgtgtgttaatgGTACAAACGCTTCAACACATCAGGTAAATAAGGGATTCTAGAGAAAACACTGATGGGATTTAGCAGGTTTTATGAGGGAGGTGTTCAAAGTATGGAATGTGATTGATAGATAGAAAAGGGTTGGTTGGGAATGGTTAGTGGACGGAGAATGTGgggtttttggttttggtttcatTGCCTTTCAGCAGTTGGCTGTATTAATGACAGGCCTATAAAAGCCTTGGTCTTTAAACTTGGTTGACTGAATTGAAAAGGCTACATTGTAGCTAAAGGTACACTGGATAAGGCAGGCTCTCCAGCTCAGTTACACCACTgtgatttcacttttttttttataattaaggctttatatttcttctttgatttgtttctatatatacatatatttaagccaattgcactttttatttaattggaagttgtaaataTTCTTAATTTAATACCACGTTAATTTCCACCCATGAGAGAATTGTACGAGGTGTCAcacagttttcctttttgtttaacGTGTTTTTAGAATAAAGGGTGAATAGAGTATATTTTCCTATTTGATAGAGTAGGGCAGCTGGGTCGCTGAAAATGTCCTGTACCTGTTTTATAGGTTCGTTTAAAGCGGCTGTAGAGAGCGGATTTCCTGCAGCTGAGGGTTTTGGTCACAAAATGGGGGATGGtaccaatttaatattattggGGGTTGGGGTCGCAACTCGGAACCCGTCTGAATTCCGTGGATGGAGGTTCCAGAATTCTTCCCAGGCAGCCTTGCTTTCCATTTACATTCTTGGCAGACATGACAGGCAGTATTtgaaggagggggagagacagtATTGGTGCCTTTTGGGAGAACAGTTCTGTGGAGTTGTCTGCACTGCCTAGACCTGCACACACAAGCTGAATCCTTCTTAACCGCTTGATGTTTGAGCTTCAGGAAAACCAGTCTGTAAAAGGGAGTGGTgggtatatatgtacatgtattttcttctctttttttctgtctgttagTATTATATCTCCTGCTTGTACATATTCCAAGTGACACTAATGTCTTCTTTTATCCATGCTATATAATGTGTATGGCATTATTAATTTCAGATGGATATTAATAACAAGGTGCTCATGTGAACACAGC

Function

symbol description
rusc2 Predicted to be active in cytoplasmic vesicle. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in autosomal recessive mental retardation 61. Orthologous to human RUSC2 (RUN and SH3 domain containing 2).

NR:

description
iporin isoform X4

GO: NA

KEGG:

id description
K23291 RUSC2; iporin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010184 True 8318 mRNA 0.55 13 17800723 17821178

Neighbor

gene id symbol gene type direction distance location
AMCG00010185 NA coding upstream 26036 17739134 ~ 17774687 (+)
AMCG00010186 NA coding upstream 75849 17713115 ~ 17724874 (+)
AMCG00010187 LOC107713368,LOC106565090 coding upstream 99222 17666736 ~ 17701501 (+)
AMCG00010176 NA coding upstream 335634 17455468 ~ 17465089 (+)
AMCG00010177 gtf2h2c,LOC100196672,LOC103032811 coding upstream 360376 17434441 ~ 17440347 (+)
AMCG00010191 NA coding downstream 124054 17945232 ~ 17954544 (+)
AMCG00010193 NA coding downstream 148032 17969210 ~ 17973694 (+)
AMCG00010194 NA coding downstream 169610 17990788 ~ 17995377 (+)
AMCG00010197 NA coding downstream 185041 18006219 ~ 18009050 (+)
AMCG00010192 NA coding downstream 200514 18021692 ~ 18034151 (+)
G78529 NA non-coding upstream 279869 17520267 ~ 17520854 (+)
G78392 NA non-coding upstream 545294 17255222 ~ 17255429 (+)
G78385 NA non-coding upstream 559238 17239050 ~ 17241485 (+)
G78381 NA non-coding upstream 571878 17226891 ~ 17228845 (+)
G78334 NA non-coding upstream 737811 17054873 ~ 17062912 (+)
G78607 NA non-coding downstream 154996 17976174 ~ 17977305 (+)
G78635 NA non-coding downstream 237541 18058719 ~ 18077267 (+)
G78682 NA non-coding downstream 629312 18450490 ~ 18450809 (+)
G78758 NA non-coding downstream 1142345 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 1150117 18971295 ~ 18971714 (+)
G78410 NA other upstream 447235 17344419 ~ 17353488 (+)
G78396 NA other upstream 522725 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 553573 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 575383 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 1253103 16465564 ~ 16547620 (+)
G78743 NA other downstream 1098733 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1266151 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 1316825 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 1783440 19604618 ~ 19629439 (+)
G79382 NA other downstream 4224940 22046118 ~ 22047542 (+)

Expression


Co-expression Network