AMCG00010198 (LOC107675632,LOC107736863,LOC107584535,LOC107661672,LOC107739687,LOC108437682)


Basic Information

Item Value
gene id AMCG00010198
gene name LOC107675632,LOC107736863,LOC107584535,LOC107661672,LOC107739687,LOC108437682
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18214015 ~ 18218373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010198
CagtactccacactactgcccttGTCACTAGTTGTCTTCTTGTTATCAGTGTAGTATTGGCAATGTTCATTCTGTATTCTGAATGTCTATTTAATCTCCTGCAGGTATGTGAGAAGATGGCGTATGGTGAAGGAGTAGATGAGCAGTCTGTCATTTCCTGACATATAAGGATACCAAGCAGaacaaacagaattaaacaGATTGCCCACCCCAATCACCCAACCGCTTAATTCCCACCCCCACTGTACTTCGAAGCCGCTTGTGCCCTTCGCTCTCTCACTCTGGTGCTCCTGGACTAAGCGAGGAGCTTACACATGTACCAGATGGTACAGGGGGGCACCACCCCCGGCACTTTGACCCCTGCCAACAAGACGAAGCAGACCAAAGATGTGCGGCCGCTGGTGGGAGCCAGCGCGCTGGGGCTGGTGTTGGTCATCGCGGCAGTGGTGGCCTGGTGCTACTACACCGCCTCCCTGCGCAAGGCCGACCTGCTGCAGACCGAGCTGCTGGAGCTCAACCGTGACGGGTTCCTGATCCGAAACCAGGCCGGTGCCATCGTCTTCCGCATGGCCTTCAGGTCTGGTGCCCTGGACCTGGACTCCTGCTCCAAGGAAGGAGAGATCCTGAGTTGCAGCCAGTCGGACACGGGGAAACTGAACTTCTTCATCCAGACGGTGAAGCCCAAGGACACGGTGATGTGCTACCGTGTGCGCTGGGAGGAGTTCGTGTCTGACCGTGTGGTGGAACATGCCATGTCCTACAACGCGTCGCACTGGTATGGGGGTGCGGAGAGTAGTACCCAGCACTGGCCTATCTCCATCTCAGGGCAGCAGGCCCCCAAACCCTTTGTGACCGGTGATGTCTACTCCAACCGGGATGCCTTTGGGGGGATCCTGGAGAGGTACTGGTTGTCCTCCAGTGCGACTGCCATCAAGATCAACGACTCTGTGCCTTTCCACCTCGGCTGGAACGACACAGAGAAGACTCTGTACTTCCAGGCCAGGTACCGGGACACCCCTTACAAGCCTGCATCTGGGCGGCCGCCCTTCCCCGAGCTGAGTTACCGCGTGTGCGTGGGCTCTGACGTCACGTCCATCCACAAGTATATGGTGAGACGCTACTTCAATAAGCCCAACAAGGTTCCCTCTGAAGGCACCTTCAGGCACCCCATCTGGTCCACCTGGGCCCTGCACCGCACCGAGGTGAACCAGGAGAAGCTGCTGAAGTACGCCGCGGATATCAAGAAGCACAAGTTCAACTGCAGCCACCTGGAGCTCGACGATAAGTACACCAGCAGGTACGGGGAGTTTGAGTTTGACCTGGAGAAGTTTCCCAACGCCACGGCCATGTTCCAGCAGCTCAAGGCCGATGGGTTCCTGGTGACGCTCTGGACCCACCCTTTCATCAACTACAACTCCTCCAACTTCGGCGTCGGGGTGGAGAGGGGCCTGTTTGTCCGCGAGCCCACGGGGCAGCTGCCTGCCATGGTGCGCTGGTGGAACGGCATCGGTGCCATCCTGGACTTCACCAACCAGGACGCCCGAGAGTGGTACACCTCCCAGCTGCGGACGCTCAAGTCCAAATACGGGGTGGATTCCTTCAAGTTTGACGCCGGGGAGACCAGTTACCTGCCTCAGCAGTTCAGCACTCTGGTCACCCTGACCGACCCCAGCACCTTCACCCGGCGCTACACTGAAATGGCCATGCCTTTCAATGAGCGCGCTGAGCTGCGGGTGGGCTACCAGTCCCAGAACATCTCCTGCTTCTTCCGGATCATCGACCGGGACTCGGTGTGGGGCTACGAGCTGGGCCTCAAGTCCCTCATCCCCACCGTGCTCACCATCAGCATCCTGGGATACCAGTTCATCCTGCCTGACATGATTGGAGGGAACGCCTACCCGAACCGCACCGACGGATCCCAGACGCTGCCCGACCGGGAGCTGTACATCCGTTGGCTGGAGCTCTCGGCCTTCATGCCCTCCATGCAGTTCTCTGTCCCTCCCTGGGCGTACGACAGCGAGGTGATCAGCATCGCCCAGCGCTTCACCGCCCTCCATGAGACTCTAGTGGCTCCCCGAGTCCTGGAGCTGGCCGGGGAAGTGCTGGACACTGGCGATCCTATCATCCGCCCGCTCTGGTGGATTGCCACCGACGACGAGGCCGCCTACAAGATCGACTCGCAGTTCCTCATTGGCGACGACCTCATGGTGGCCCCGGTGCTGGAGCCGGGGAAGCAGGAGAGGGACATCTACCTCCCGGCGGGCCGGTGGCGAAGCTACAAGGGTGAATATTTTGATAAAGGGCCTATGCACCTCACAGACTACCCCGTTGACCTGGACGAGATTGCTTACTTTGTCTGGGTTCAGGGTGGATAGCGATGAAGCGGTGCGCTGCGTAGCGGGCCTTTTGTAGATCATGTTGAAATGGCAGCGTACTTCAGTCTCTTCCTGTAAGGCAAGGATCTGATTAACCAACTTAAGTTTCCATCAATGTAGCTGCAGCTAAATGTTCATTCATCTGATCTATTTTTGGGCTGAAGATGCTTCAGGAGTTCCACGTTGCTGATCTACCTACAGGATTCAGATCCTGGTTTCGTACAAGACCTCCAGAATCTATGTGCTGTGAAATTTCCACCAGTATGGTTATTCAGAGTTTAATCTTTGTACTCTGCCTTGTAGCTCAAGGAACACGTTCAACTAATGCTTAAAAGGTTCCGTTAACTGCCTCCAACAGGGCTAGGGGCTACATTAAGATTGCTATTGTACTTGACAGGACTAGATGGTTTGATGTTCTAATTCAGGCCTGGGCATCCCCAGTCCTCAAGGATCACAGTTGTCATTGCAGCTGAGCTCCTTAAGCCAGAAAAgttttatttaactaaataatgtttttccagTTCTTAAACCTGTGACTTAAGATTTGTATCCCTCCAGACCCGGAGTTAGAAACCAGTGCTCTAAAATTTATATTTAGGAATGCTTATGGCTTAATTCTTCATTAAGTGGTTACTATATGGAAATCGTACCAGTTTTATGTGTGATATTGGCCATTAGATAAGCATCCTGTTTTTACAATTGAGGAATGACAAATCGACAAATCCgcaatttgtgtgttttaaatgaagggTTTCCATAGTTTTCTGATGGGGGAACCCCAAAATATCACTATCAATACCAGCAGGGTGCCAGTTTAACCTCTgaatgtaatgcatttcaaatacacaattttaaattggtactactgacaaataaataaaccaatgcaATTCTATTAGTCTGGAAGAAACTTATATTTCAAAAGGTTGTTGAATTGCAAGGGGACTCCTGGAACTTCCCTGTGAGTTCCAGTTAAACTTTAATATTCAAGGTAAGCTGCGATACACAAAGACGGGAAGTGAAATTGGAATGGATTTAAAATTTCACCAAGTTTTGCTCACCCTGTGAAGAACAGACTTGAAACTCATCTCAGCTCGAGTCTGGAGTGGTGAATTCCatacctttttatgtttttaacgTTGGTTATCGGAGGTCAGTGGGGATCTTGCCAAAAGGGAAAATTAGCACAATGCTGATGTGTTAGCTCACATTAAtcaccagtgttttttttttttttttttttaaatcaatataa

Function

NR:

description
PREDICTED: uncharacterized family 31 glucosidase KIAA1161-like

GO: NA

KEGG:

id description
K24727 MYORG; myogenesis-regulating glycosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010198 True 3630 mRNA 0.52 2 18214015 18218373

Neighbor

gene id symbol gene type direction distance location
AMCG00010199 NA coding upstream 11577 18188178 ~ 18202438 (+)
AMCG00010200 NA coding upstream 36173 18170670 ~ 18177842 (+)
AMCG00010192 NA coding upstream 179864 18021692 ~ 18034151 (+)
AMCG00010197 NA coding upstream 204965 18006219 ~ 18009050 (+)
AMCG00010194 NA coding upstream 218638 17990788 ~ 17995377 (+)
AMCG00010201 celf4,LOC103139612,LOC106958278 coding downstream 459848 18678221 ~ 18684640 (+)
AMCG00010204 celf4 coding downstream 558083 18776456 ~ 18805818 (+)
AMCG00010203 NA coding downstream 632784 18851157 ~ 18866491 (+)
AMCG00010202 nop56,LOC107661748,LOC107739720 coding downstream 656389 18874762 ~ 18881791 (+)
AMCG00010212 NA coding downstream 852554 19070927 ~ 19080716 (+)
G78635 NA non-coding upstream 136748 18058719 ~ 18077267 (+)
G78607 NA non-coding upstream 236710 17976174 ~ 17977305 (+)
G78546 NA non-coding upstream 368469 17794440 ~ 17845546 (+)
G78529 NA non-coding upstream 693161 17520267 ~ 17520854 (+)
G78392 NA non-coding upstream 958586 17255222 ~ 17255429 (+)
G78682 NA non-coding downstream 232117 18450490 ~ 18450809 (+)
G78758 NA non-coding downstream 745150 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 752922 18971295 ~ 18971714 (+)
G78772 NA non-coding downstream 787916 19006289 ~ 19010099 (+)
G78774 NA non-coding downstream 795029 19013402 ~ 19013758 (+)
G78410 NA other upstream 860527 17344419 ~ 17353488 (+)
G78396 NA other upstream 936017 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 966865 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 988675 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 1666395 16465564 ~ 16547620 (+)
G78743 NA other downstream 701538 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 868956 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 919630 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 1386245 19604618 ~ 19629439 (+)
G79382 NA other downstream 3827745 22046118 ~ 22047542 (+)

Expression


Co-expression Network