AMCG00010201 (celf4,LOC103139612,LOC106958278)


Basic Information

Item Value
gene id AMCG00010201
gene name celf4,LOC103139612,LOC106958278
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18678221 ~ 18684640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010201
ATGGCAACGTTAACGAACGGGCAGACTGACACCTCGAGTCTGAGCTCCGGACACAGCAGTGCCAGCACAAACGGGCTGGTGAACGGATTAAGCCACAGTCCTGGCAGCTGTGCCACCATACCCATGAAGGACCACGATGCCATCAAGCTTTTCATTGGACAGATCCCCCGCAACCTGGACGAGAAGGACCTCAGACCCCTCTTCGAGGAATTCGGCAAGATCTACGAGCTGACGGTGCTGAAGGACCGGTTCACCGGCATGCACAAAGAGTACGGACGACGGGGACGACAGCTCATagagggcgggggggtgggTTCTCCAGCTGAAGAGTGGACCCTGAGAGGGGGCAGCTGA

Function

symbol description
celf4 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF4 (CUGBP Elav-like family member 4).

NR:

description
PREDICTED: CUGBP Elav-like family member 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010201 True 354 mRNA 0.59 2 18678221 18684640

Neighbor

gene id symbol gene type direction distance location
AMCG00010198 LOC107675632,LOC107736863,LOC107584535,LOC107661672,LOC107739687,LOC108437682 coding upstream 459848 18214015 ~ 18218373 (+)
AMCG00010199 NA coding upstream 475783 18188178 ~ 18202438 (+)
AMCG00010200 NA coding upstream 500379 18170670 ~ 18177842 (+)
AMCG00010192 NA coding upstream 644070 18021692 ~ 18034151 (+)
AMCG00010197 NA coding upstream 669171 18006219 ~ 18009050 (+)
AMCG00010204 celf4 coding downstream 91816 18776456 ~ 18805818 (+)
AMCG00010203 NA coding downstream 166517 18851157 ~ 18866491 (+)
AMCG00010202 nop56,LOC107661748,LOC107739720 coding downstream 190122 18874762 ~ 18881791 (+)
AMCG00010212 NA coding downstream 386287 19070927 ~ 19080716 (+)
AMCG00010213 NA coding downstream 418228 19102868 ~ 19108097 (+)
G78682 NA non-coding upstream 227412 18450490 ~ 18450809 (+)
G78635 NA non-coding upstream 600954 18058719 ~ 18077267 (+)
G78607 NA non-coding upstream 700916 17976174 ~ 17977305 (+)
G78546 NA non-coding upstream 832675 17794440 ~ 17845546 (+)
G78529 NA non-coding upstream 1157367 17520267 ~ 17520854 (+)
G78758 NA non-coding downstream 278883 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 286655 18971295 ~ 18971714 (+)
G78772 NA non-coding downstream 321649 19006289 ~ 19010099 (+)
G78774 NA non-coding downstream 328762 19013402 ~ 19013758 (+)
G78939 NA non-coding downstream 806017 19490657 ~ 19494085 (+)
G78410 NA other upstream 1324733 17344419 ~ 17353488 (+)
G78396 NA other upstream 1400223 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 1431071 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 1452881 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 2130601 16465564 ~ 16547620 (+)
G78743 NA other downstream 235271 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 402689 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 453363 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 919978 19604618 ~ 19629439 (+)
G79382 NA other downstream 3361478 22046118 ~ 22047542 (+)

Expression


Co-expression Network