AMCG00010212


Basic Information

Item Value
gene id AMCG00010212
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19070927 ~ 19080716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010212
TGTTGCTGTAATTTCTTatagaaatgtaatgcatactCCATTTGAAGTAGCATAATGttatcaatatttgtattttttttacagaaacaaatattgcaTGAAGCTaaattcactttttctttttaggtgAAATGGAGAAAGCACTTCTTGTAATTGTACAAGTTGTGTTGTTCCCTACTATTCCAGGATTATTCACAGTGGAAATGACAAACAACTCTTACTTGGCCGAGATTGGGGGTGTCATCACAATGGAGTGTCGTTTCCCTGCAGAGGATGGAGTGATCCTATCTGGGTTGAATGTCCACTGGCATCGCATCCAGTCTAGTGGCTCCCTGGAGGTTTACAGGCTGGTGAATGGACAGGAGGACCTCACCTTCCAGCATTCCCAATATAAAGGCAGAGTATGCCTGCAGAAGGAGAAGCTCCCAATGGGCCTGGCTGTGTTGCAAATATCAAATCTCAGCATCTCAGACTCTGGGAAATACAGATGCCTTATTGAACTCGGAGGAGCCGACTATAAAGAGTTTACTCTCACAGTGCGAGCTGcctataaaccaataaaaaaagacataagAAAAACCGAGGAGGACAACATGGTGGAATTGTCTTGTCAGTCAGAAGGCTACCCTTTAACCAGTGTTTTGTGGAGGGATGCAACTGGAAAGAAACTATCCATGAAAGCCAATACCACATATTTCAAAACTGTAAAGCACCTCTTCCACTTATCCAGTCAAGTCATTATCAcaacaaccaacaacaacacatacacCTGCACTTTTTTGGATGAGGCAGGGATGGGCTTTTCAGCCAGTTTTAAAATTCCAGATGATTTGCGGAATTCTACTGACTTCCACCTTgactacagaaacagaaacactttGACTACAGTTATGGCGATACTGATTTCAGCTCTAATACTTACAGTGGTCGTGGCCATCGTGGCATATCACAGGCTGAAAGGTAAATTCATGGTTTTGCCAATGTCACCATATAGCTCgtaataaaattataatgaattatgtattatttatttaatgtttaacatCCTCTAATGTGGGTTGACTGAATCGGCACTTAAAGCTAGGGTGAATCTGGGGCTTTTGTCACATTTGTGTACAGTTCTTAGAAGAAcattctatattctatattctatataatGCTTGAAAATTATTAGGAATATTAAACACATGAAATACTGAAACTCCTGAAGTGCTGCTCAGCTTTAGTACACTGTGCGGTAAAGAGTAAATAAGTTGTTCCCTGTATGTGTTTATTagaaagtaaaaagtaaaaagtgatTTGTGAGAAGTGAAGTGTTGCGGAAGCTACTGAAACCCCTTCAGTATTGTCCTCTGTAGCCATACAATGAAGTATATGATAAAGCTGAAGTATGACAGCCAATGGGACTTTTTTTTTGAGATTCTATGTGTTGTGAAATTCACTTGATTGTAAAcctcattttatgtttttctgtgtgaTATGATTCTGCAATTTCCTATCGTtttcaatgtgaaaaaataaaatatccccTTTTTTGGCCCGCCACTTTAGGGAATTTGACAACATCGCATTACAGATGTGTGGGTGGCACTTAAATTAGAATTGTCATGGCTCATAACCAAGCCTCACACTGATGCTAGTAATGAGGGAATGCACTtcttttgtaacatttatttcatagaatattattttttcagttgttgGAACTAAAGAAAGTCTTTTTCTTGTATGCACACAAACCAGCAGTGAAGTTTCTGTTTGACAGAAATGTCATACCCATTGTAAAGCATGGATATTaatgtgtgtttgctttggTCTAGTATCCTCTAGTCCTGGTGTCCTTGTTAGAATTGAGGAATGGATggattgaaaaatatatcattatattttagCCAATAAATTGGACTCTCTCTGCATAGAAATATAAGCTCAGTTGTAAATGGACTTTCCAGCATGTGAACTATCTGAAGTACACATTCAAGTCTACTACCAAAAGGTTAAGGGAGCACAAAATCAGCATTCTTGCTGATTGGCCATCACAATCTCCAGAAGAGTTTGGTATGaactgaatggaaaaaaatggtTGCATTCGTTCCAATTAACATGGGATCAGTAGTAAAATTTAATGAAGTCACATTGTAGATTTCTGATGTATGCCCCCGCAGGCTTGAATTTACAGTaacaaagttttaaaaagtgtagTTTTCAGTCACCCTACAAATGTAGTATTACAGTTTAGTTTACTTTTAACTGGCAGTAGTAATTTGCAACCTTGggttattacattttcaataagtTTGGTTGTTGTGTTCTTTCTTGGGTTTATTTCAGAGGGGGGCAGCTATTCTCCTCCCTCGACCACAGCTTCCCTTTTGTCAGCTTTATTAGAAGGACTCCAAAAGTGAGGCAaaagaattattatttttaattaactataaGCCTATGTCATGGAAGGTAACAAAGCTCagcttattatttatatacagtactgtgcaaaagttttaggcaggtgtgaaaaaatgctgtaaagtaagaatgctttcaaa

Function

GO: NA

KEGG:

id description
K06745 PDL1, CD274; programmed cell death 1 ligand 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010212 True 2546 mRNA 0.37 4 19070927 19080716

Neighbor

gene id symbol gene type direction distance location
AMCG00010202 nop56,LOC107661748,LOC107739720 coding upstream 189136 18874762 ~ 18881791 (+)
AMCG00010203 NA coding upstream 204436 18851157 ~ 18866491 (+)
AMCG00010204 celf4 coding upstream 265109 18776456 ~ 18805818 (+)
AMCG00010201 celf4,LOC103139612,LOC106958278 coding upstream 386287 18678221 ~ 18684640 (+)
AMCG00010198 LOC107675632,LOC107736863,LOC107584535,LOC107661672,LOC107739687,LOC108437682 coding upstream 852554 18214015 ~ 18218373 (+)
AMCG00010213 NA coding downstream 22152 19102868 ~ 19108097 (+)
AMCG00010214 NA coding downstream 36019 19116735 ~ 19119081 (+)
AMCG00010218 NA coding downstream 109166 19189882 ~ 19229691 (+)
AMCG00010217 NA coding downstream 149146 19229862 ~ 19245933 (+)
AMCG00010220 gak coding downstream 197628 19278344 ~ 19326725 (+)
G78774 NA non-coding upstream 57169 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 60828 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 99213 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 107202 18963523 ~ 18963725 (+)
G78682 NA non-coding upstream 620118 18450490 ~ 18450809 (+)
G78939 NA non-coding downstream 409941 19490657 ~ 19494085 (+)
G79081 NA non-coding downstream 1201643 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 1386593 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1550496 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1576633 20657349 ~ 20657834 (+)
G78743 NA other upstream 149483 18919911 ~ 18921444 (+)
G78410 NA other upstream 1717439 17344419 ~ 17353488 (+)
G78396 NA other upstream 1792929 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 1823777 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 1845587 17220036 ~ 17225340 (+)
G78794 LOC107575789 other downstream 6613 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 57287 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 523902 19604618 ~ 19629439 (+)
G79382 NA other downstream 2965402 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 3277253 22357969 ~ 22378809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location