AMCG00010216 (LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676)


Basic Information

Item Value
gene id AMCG00010216
gene name LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19138003 ~ 19184069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010216
ATGTGCCGCTACGACCCTCTGCAGGACAGCACCGGAGAGGTGGTGGCAGTCAAAAAGTTGCAGCACAGCACCGCCGAGCACCTGCTAGACTTTGAGCGCGAGATTGAGATCCTTAAGTCACTTCAACATGACAACATTGTCAAATACAAAGGGGTGTGCTACAGCGCAGGTAGCATCTAG
>TU98308
GCTTTTACTactcattacaaaaatatatattctgcctAGCATTTTAATCCGTCTTTGAACATGTTTTATGCAGTGGATACTGTCAggatttaattgcttaattacaGTGTTTAGGGTCTATGATGGGTCACAGCCATTGGccattaaagtttttattttgttatagctttctaattttgtgaaataatggTCCCAAAggtataatgtaaatgtaaattagcATTTCAGTTCACTATAACGTTTTCCCTAAGGATATACATGATTTATATCATAACTGGGGCCCTGTATTTTGTATGAAAtagtttaaaaacttttttctaAAAGCATGGTCTAGCCATAACCTGTGAAGTGAcgttatataatatataataatattgcttGGTAACAATTTCTAGAGGCAAATACAgctgattatttatattatttcaaaagctTGACCCCAACATTCTATTTTGCAAAAAATGTCACAGGATGTGAATAGAAGTTGGtgatctttacatttttgtagacCCAGGTTGGTACTAATCTTGGGCAACCCAATGTTAATTTATGAAaggtagtccaagactagtgctaattgaAACCAGCTGCCACTGTTTGAATCTCTAAAATGCACATCTTTCCTGTGGGCACAGGGCAATTTTGGCAGTGTGGAGATGTGCCGCTACGACCCTCTGCAGGACAGCACCGGAGAGGTGGTGGCAGTCAAAAAGTTGCAGCACAGCACCGCCGAGCACCTGCTAGACTTTGAGCGCGAGATTGAGATCCTTAAGTCACTTCAACATGACAACATTGTCAAATACAAAGGGGTGTGCTACAGCGCAGGACGAAGAAACCTGCGGCTGATTATGGAGTACCTGCCCTTCGGAAGTTTAAGAGATTATTTAATCAAGAACAAGGAAAGGATAGACCACAAAAAGCTTTTCCATTACGCGTCTCAAATATGCAAggtatttgcttttcttttgaaccTCACTGTAACgtacatgtatacataatcCTTCTCAATTTTTTTCTCAGACTATTTATTAACCCTGCTTGCATCATAAacaaggttaaaataaataaatgagattgtttttcacaaatgttACCTTT

Function

NR:

description
tyrosine-protein kinase JAK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010216 False 180 mRNA 0.53 2 19138659 19184069
TU98308 True 1098 TUCP 0.37 2 19138003 19139647

Neighbor

gene id symbol gene type direction distance location
AMCG00010214 NA coding upstream 18922 19116735 ~ 19119081 (+)
AMCG00010213 NA coding upstream 29906 19102868 ~ 19108097 (+)
AMCG00010212 NA coding upstream 57287 19070927 ~ 19080716 (+)
AMCG00010202 nop56,LOC107661748,LOC107739720 coding upstream 256212 18874762 ~ 18881791 (+)
AMCG00010203 NA coding upstream 271512 18851157 ~ 18866491 (+)
AMCG00010218 NA coding downstream 5813 19189882 ~ 19229691 (+)
AMCG00010217 NA coding downstream 45793 19229862 ~ 19245933 (+)
AMCG00010220 gak coding downstream 94275 19278344 ~ 19326725 (+)
AMCG00010221 acaa2,LOC107752996 coding downstream 154670 19338739 ~ 19360722 (+)
AMCG00010223 kcmf1,LOC107684340 coding downstream 263268 19447337 ~ 19460145 (+)
G78774 NA non-coding upstream 124245 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 127904 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 166289 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 174278 18963523 ~ 18963725 (+)
G78682 NA non-coding upstream 687194 18450490 ~ 18450809 (+)
G78939 NA non-coding downstream 306588 19490657 ~ 19494085 (+)
G79081 NA non-coding downstream 1098290 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 1283240 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1447143 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1473280 20657349 ~ 20657834 (+)
G78794 LOC107575789 other upstream 50249 19087329 ~ 19087754 (+)
G78743 NA other upstream 216559 18919911 ~ 18921444 (+)
G78410 NA other upstream 1784515 17344419 ~ 17353488 (+)
G78396 NA other upstream 1860005 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 1890853 17245585 ~ 17247150 (+)
AMCG00010224 NA other downstream 420549 19604618 ~ 19629439 (+)
G79382 NA other downstream 2862049 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 3173900 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 3515673 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 4131946 23316015 ~ 23329546 (+)

Expression


Co-expression Network