AMCG00010224


Basic Information

Item Value
gene id AMCG00010224
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19604618 ~ 19629439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010224
CTTCCGGAATCATGTACAGTTTTGTCGCGTCTGGATGACATCAGAGGAAGAGCCCCACGCGTCATCAGTTTACAGTCAACCATCCAATCACGTTTGGCGTTTGTCTGTGAACTACTTTTTGAATAGCAGAGCATTTGAGAGCTCGATAAGtaattacagtgcagtatagaTTTTACATATACCGATTGGTGTAAAATAGCCATATATTATGGACGTAGATATTTTCACCAAACAAATGATGGAGAATGATAGTATTTATAAGAACTCCCTGGAACGGATTTTTGACAAGGATGATTCAATGGAGAATTCTGCCAAAAGGTCTGACACAGATGCAGGTTCCATGGAGACCAGCATATACACCAGCAGAGACACCTCTTTAAgtGATTCATCTCAGCCTTTGTTTCCCAAATGTGAAATCTTTGATATTGAGGGCAATTCCAGCTCCAGCACAGGGGTGACCTTCACCATACCAGAGGAGGATTCAGAAGGGGATCAGAGCCTAAGCAACAATGGCTCCACACTGATCGAACTGTATCCCCAGATGCTGACGCAGATGGGAAACGTGTTGCGCCGGCAAGCTACAACAGAGGCAGCGTCCAGTGTGCTTAAGCACTATCGCAAGCGTAACCGGTACAAGTACAACACCATGGCCAAATCCACTGTGAACCATATCCGGAAACGGGAAAACTCCCAGGGGAGCAGTGGCACTGGATTGCCACTTGTGGAACGATCTAAATCGAGCTGTTCATTTTCTCTGATGGCTTCATCATCAATCTCCAGGTCTCCTCAGTCAAACCCCAGATTTCTCTCTGAAACCTATGTTGTTAGTCCTAAAGCTTGTCACTCAAGAGGGCATTTCCTTGTAGCGACACAGAACCCTTTCAGAAAGGAATCGCCTAGACaggagctgctgctgtcctGTCTGCCGTCTCCTGTCCGAGGCAAAATCCAGACACCTTCTGTGATGCGTAAATTGCCAAGATGGGACTCTTGTCCAGCCTTGCCAAACTCCATGCCAGTAGGGGTTGGATTTACTCCAGGATCATCTCCTGCCCCATGTAGAACCATCGGCAGGATTAGACTACCTTCCATTAATGCCCTGTCACCCAAAAAGCAATTTGAGTCATCTTCTTTGGGCAGACAGCAATCTCCTTCAAGTTTGACCCCAACGCGACGCCCGCCATCTGAGTTTGTGATGACTTCTCCATTCACAGGAGTGGGAGTCCATTTGATGACGAAACCAAGGAATCCTCTGCTTCAGAGGAGACATTCCTTCTCTGGGTTCCAGCAGAGCATTAAGAAAGAGACCAACCGGGAATTTGAGAAGCTCTTTCAGAAAGTAGTCCTCGGTAATGATTCTGCTTCACCCAATGCAACCACATCCAGAAGAGTGACAGAGATTTGCTTGCTGAACTCCTCTCCCTGCTCCTCACCAAGGATGGAGAAACGATCTGGTGCCTTCAACAAATACCACTCTCCACCAATGAAAAAGTTCCGTGGGTTGTCTGACTACTCTAGTTCCAGGAGCCCATCGAAATGTAATCTAGGTCTTCACTGTGATGTCCAGCAGAAGACCTGCGCTGCTGAAGATACTAAACAACAGGGGGTGGTTGCACCGTCGTCAGCCTCGTCCTCTTCCCCCACATCGCAGATCCAGCAGGCCGGGGAGGCAGGCCGGGCGCAGCGGCTGCAGCAGGACGGTGAGGATCAGCCCAACTCCCTCCCGCGCGCCCGCTCGGCGCTCTGA
>TU98500
CCGGCGCTGTACGAGATGCGCAAGGGTGGACTGCTGGAGAGCAAACCACGACGCCTTGCTGCACCGCTGGGAGCTCTCTATTATTTATGACCCCTTACTTTTTGTGGTGTCAGCCTGCGCTGCTGAAGATACTAAACAACAGGGGGTGGTTGCACCGTCGTCAGCCTCGTCCTCTTCCCCCACATCGCAGATCCAGCAGGCCGGGGAGGCAGGCCGGGCGCAGCGGCTGCAGCAGGACGGTGAGGATCAGCCCAACTCCCTCCCGCGCGCCCGCTCGGCGCTCTGACGTCATGTGTGCTCCTTTCGGTCTCCATAGCAACCCCGTTCCCTAACCCCTCTGTCTCCGCTGGCAGCCACAATGGTACAGCCAGCATCTTGCAGCACAATGGTTACAAGACGGTGAAGGGGAGTGATTCAGCAAGGCAATATCCGTGCTTTccctgtattttctttctccGGAGGCTCCGTCTTCCTTCTCGAAGGTGCTCTCCTCGCAGCTCCGCGCTCAGCCCCTCGCCCGTGGGCATGCTTTGAGCAGCACCGCGCACTGGGATTGTCGTCGGCCGGCGCGGAATGGTAGGTGATGGGCGCTGTTGATGCGGGCAGGCTGACCCGCTGAAGGGTGGGGTGATGAATATTGATTGCTGCAAAGGTTAATGAAGTCGACTGATGCCGCCGTGGAAAGGACAGGGAGGATAACAAGTGCGAATGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010224 True 1747 mRNA 0.49 4 19604618 19629011
TU98500 False 714 lncRNA 0.60 1 19628726 19629439

Neighbor

gene id symbol gene type direction distance location
AMCG00010223 kcmf1,LOC107684340 coding upstream 144473 19447337 ~ 19460145 (+)
AMCG00010221 acaa2,LOC107752996 coding upstream 243896 19338739 ~ 19360722 (+)
AMCG00010220 gak coding upstream 277893 19278344 ~ 19326725 (+)
AMCG00010217 NA coding upstream 358685 19229862 ~ 19245933 (+)
AMCG00010218 NA coding upstream 374927 19189882 ~ 19229691 (+)
AMCG00010228 mapk10,LOC107719076,LOC107749009 coding downstream 81888 19711327 ~ 19721563 (+)
AMCG00010227 mapk10,LOC107749009,LOC107719076,LOC107662288 coding downstream 102435 19731874 ~ 19756078 (+)
AMCG00010231 NA coding downstream 376785 20006224 ~ 20018927 (+)
AMCG00010236 NA coding downstream 431810 20061249 ~ 20140278 (+)
AMCG00010235 NA coding downstream 564505 20193944 ~ 20202940 (+)
G78939 NA non-coding upstream 110533 19490657 ~ 19494085 (+)
G78774 NA non-coding upstream 590860 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 594519 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 632904 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 640893 18963523 ~ 18963725 (+)
G79081 NA non-coding downstream 652920 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 837870 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1001773 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1027910 20657349 ~ 20657834 (+)
G79118 NA non-coding downstream 1140560 20769999 ~ 20773081 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 420549 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 516864 19087329 ~ 19087754 (+)
G78743 NA other upstream 683174 18919911 ~ 18921444 (+)
G78410 NA other upstream 2251130 17344419 ~ 17353488 (+)
G78396 NA other upstream 2326620 17274387 ~ 17277998 (+)
G79382 NA other downstream 2416679 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 2728530 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 3070303 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 3686576 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 4291321 23920760 ~ 24009853 (+)

Expression


Co-expression Network