AMCG00010252


Basic Information

Item Value
gene id AMCG00010252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21081237 ~ 21105093 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010252
GTTCAATTGAGCAAAACTTCTAAAACAATACGCTATGATAACCTGAAATAGACTTAAATCCACTTAAACCATACATTCACTCACACGTGAGacagttttcaatttaaaactaCCAACAAGACGATtagcaattattattaaatacgcTCGACAACCGCGTTAGCAAAGCGAGAAAGGAAAAGCGCGACTTGACATACGACGCATAAGAAGTGAACTAACCGTGTGTCTGATGGCATTCACAACCGGCAAAACAACGACAACAAGACTTTGAAATCAACACCAAAGTGCTCCATTTCGCGGAAGTAACCAATGCTTACCTGGGTGCTTCGTTACAAAGACGCGGCGGAGTAAACGACACAGAGGAAGTCAACTTTCTAACATCTTCTTTTTGTCGTGTCTAGGTTCTTCAGTGGGTACAATGGTGAGCCGAGAGACCTTCTGCATGCCCCAGTTTATTCTACCCTTGAAAAGTCTTGTGGTGCCTGAAAATGCTGAAGGCCATCTCATCTGTACTGTTACTGGCTCCCCTGAGCACACTGTCACCTGGTACAAGAATGGGCAAATCTTCGACAATTTAAGTGGATGTTCTGAATATGAAATTTTAGTGGACAACAACATCCACTCCCTTCATTTGTACAAGTGCACTGAACAAGATGCAGGAGTTTACCAGGTGTCAGCAAGGAACAACCATGGGATGGCCAGCTGTTCGGCCGTGCTTGAAGTTGGCTCTTTGACACGCATGAAGGTTTTTGATGGAATGaagcaaaaatacaatgaaaataaagattgtCATGAAAGTGAGACAGGGAGCCGTCAGGAGCATGAGACAGTTAATCAGCTAGATGGGGACATCGACAAGAATATGGCTCATGAAGAAACTCCAATTAAGTCACATGTGGATTACCAGTCAGAAGTGGAAGAGAAAGCCACAGAACAACTCAATAACTGCAGCCAAAATAATGGACATAAACATATTGCAGAAGGGTTATGTGTTTCCCACACTTCCTTCCCTAGCCTTGAAGAGGACCACATGCTTGATAGCActgacacaaatgtatttaaaagcaacTCACATACTATAGTGACTGACACATACCAGATAAATGAAAACAGTGACTTAGCAAAGGCTATGACAATCCTTAGAGCACCTGTTGCTAAAGGAGAATTAGCTGAGATCTGCACAGGGGCCCAAGAAGAGCCCTTCTTGCCCATTAACTCTAAAAATGGATACAGTATTTCTAATGAGTCCTCCCTGGAGACCAAGCTTATCCTTTCTGTTGAGGATGACCAGGATATCCTGGATGAATTGCAGTGCTCTGATGTCATGACTGAGTACACCAATGCACTATGGCAGGCTAGATTGCAAGGGCATGAGTTGCCTTTAAAAGAAAGTGATCGCATTGATGATGTCCAAGCCCAGATGGAGGGCCACATTGGTAGccttaaagaaaatacaaagcagCACCAGGTGTCAAATTACTGTAAGGCTATGGAGCCTACCATTGGCTTCCCTGGTGATGAGTCAAGACTGAGGAAGCCACCTGTTCAATGTTACCCATCTGGGGACAGCTGGCCAAGCAGATACTCTGAGATGCTTTATACAGGCACAGAAAGTCAAGATGGCTTGCCTTCAGTAGGAATGCTAGAAGTGGCATCCATGGCAATCAAAGACCAAGCCAGTAAAACACaggaagggaagaaaaagaacatCATCTTAACAGAAGAGACATGTTTAcaagaaaaatgtgaaatgacGATAGagagaaaaatggaaaatgtacagCCCGGTCTACAGATTTTGGAGGTGTTTGGTGAAGGAAAAGAGGGCAGAGAAGGACCATTCTCAGAAGAATATTGCCCTGGAGGTACTTATTCAGAGGAAGAGAGTTGCTTGTATCATCTTAACTCTATGGATTCTAATAAACGTGGTGAGTGGGATATGACTAAAGCTGTATGCCCCTGTGAGTTCCTGGACTCTGCAGAATCTACAGCAGCTTTAAGTGGCAAAGCTACTGTGAAATATAATTCTCAACAAAATGCTCTTTTAgagcaaacagacaaaaagacaGAGCATAACACAAACACTTCTTTTTGCACGTTTGGTGGGGATCAGGCAAACACCTCTGAATGCCGAAGGGCTTCAGGAGAACTGCAGATGCCAGTGacAAATAATCACCTGGGGATTACAGAAGACCGCACTACACATCCTTGTTTTGATTTCAAGAAAGCCGTGGATGGAAGCAATAAATCTGAAAAGTATTACTTTGGCAAATATTTTACTAAGGAACATATCCATGAAGGGGAAAAGGGTACTGATGATAGTGATGAAAGACTGTTATCCATCATAGAAGCAGAATTAATTAAAGAGGCTCCACAAAAAGATAACATTGTctctgcaattaaaaacaatacaattgaaGGCTCACCAGACCAGAACCGAAAGTTTGAACATAACGAAGGAAAAGAATACTGGGCGCTGAAGGACCTTGCAGATCATCTTGGTTCTCCGGaggaaaatgtctgtttaattaCACTGAATGAAAAGGATATGACCCCAGAGACTCTTATGCCTTTAAATTCCCTTTTCCAGCCAAGTTCTATATTCAGTAAAGACTGCAGTTTGAATAGGGACCACTATAGTGGGAGTTTAATGACCGATCTTCAATTGCAGGGTATTGCACTACTTAAAACTGACAAGAACTCAATAAACATCAACCCATCAGCTGAAGTAAAGCGTATTGTCAATGAAGGGAAAGATATTTCTGCAAAGACAAATGACGAAAAGGTCCCACATGAATATGGTGTGCAATATAGTGATCTAATGCTGGACACCAAAACTCTGTCCCTCTCTGGAACAATGGGTTTTCATGAAACTCATACAGATAACAGAGATGCTTACACTAAAAATGATTTTCTGGAAAGTAACTTCTCACAATTCAGTAGTGCTCATCCACCTATTGTCAAAAAGCCAAGCACCAgtaacaaagaaacacaatccAATGAACAATGTCAGTCCCTATATGTTACATCCAGTCAAGTAACGTTTGAAAAAGATACTGCTGCACCTCCATTACCGAGGGATTTCTCACATCAAAGCCAAATTGGGTCAGAGGAACCTAGCATGTGTATTAAAGCATGTGATGCAGTCAGTGAACACAATAATGTTACACAAGCGGTCAGCAATCTCAAATGGTCTGTTAGGGAAGTTGGATACCAAGCAACTATTGACAGTCCTCTCAAAGGGACTAATGACTTTGCTGTTAAAAGACTCTTGCTTGAAAAAGAATCAATTCAACCAGAAAAAGATACTAATGCATCACCTGCTAAAAAGGAGAGAACCATAAATAAATCTCaaggcagaaagaaaaaaaataattctcagATAAAGGATGATGCGGAACTATCAGTGAAATCCCACGAAGACCAAGTGTTGCCCTTGATGGAAATAGAAAATTCCAAAGTGACAACTGTAAAGGGAAAAGCTGCAGCTTTTGAAGCAAAAAATCCTATTCTGggtaagaaaaacaatgaaaagctGACAATACTATCTTCAAaaaatgaactttttcagcCAGATAGCAGACAGAAACTACTACCACCCAAAGATTTCCCATTTAGAGAAAGACATAAGGTCACCTCTTTAGATAATTCTATGGATTACACCCCAACACAAGAAACCCAGTCAGACTGCATAGACCTGGTGGACCAGCATGAAGAAGATATTGCCAAGCGCATGCGTTTGTCAGAGGATGAAGCTATAAAAAGCttgtcagaaacaaaacaacagcagtcaCATTTGGGAGTGACAGAGTGTACTGGCCTACAAAACAATGAGGGGCATCATGTTACAGGAGGGAAGACCCATAAAAAGCCCCTTAATgagccacaaaaacaaaagcacaacacaaagcaGGAAAAGAAAGCCCCTAAAGTCCTGCAGAATATCCGAGCAGAAAATGTTCCAGAGAATTCTAGTACCATCAATCTCTGGTGCCAGTTTGGGGACATCCACACAGACTGTTTTATCACATGGATTAAAGATGGTTGTTCTTTGGCAGAAGTTAAGAGAAGCACAGGTGATGAAAGCCTTGTATCATTTGAGATTATCAAGGCTTCAAGTAAAGATCTTGGAATTTACAAGTGCAATCTCAACAGCCTTCATGGAAGTGTGTTCTCAGAGTATTGTCTCTCTGAAGAAGAAGGAGAAGATATTACATGTGCTCAGTTACTGTTCAATGAAGATTTTCTAAGTGAACAATATTTTGGGGACAATAAGCCCGGCTGCATTATTACTGAAGAGAGCCACTTTGAAGAGGGGATGCACCGTAAGGCGTTCAGGACAAGGGTTACAGAGGGGCTGTGGCCACTTTTCAGACCTGGGCACCTCTGTGTCCTCAAAGTGCACAACTCCATCAGCTATGGGACCAATAACAACGATGAGATCATCCAGAAGAACTACGCCTTAGCTGTAGAGGTTTACACAGAGGAAGCCAAGTCTATAGAAGCATTCGGAGAGGTTCCTGAAATCATTCCTATCTATCTTGTGTACCGTCCTTCCAATGACATCCCCTATGCTACTCTTGAGGAGGAGCTGGTTGGAAACTTTGTGAAGTATTCTGTTAAGGATGGCAAAGAAATCAACTTGATGAGGAGAGACTCTGATGcaggacagaaatgttgtaCCTTCCAGCACTGGGTCTACCAAAAGACAGAAGGCAACCTGCTTGTCACAGATATGCAAGGAGTGGGGATGAAGTTAACAGATGTTGGAATAGCGACCTGTAAGAAAGGATATAAGGGCTTCAAAGGCAACTGTGCCACATCCTTCATTGACCAGTTTAAAGCACTCCACCAGTGTAATAAATTCTGTGAAATGCTGTGGCTGAAGTCTCTACAACTCAGTCAACAGAAGCCAAGGAGAACCGCGGCTGTAGCAAAACCAAAGATGCAGCCCAATCCCAAGAAGCTGACCTTTACTCTGAACTCCAAGAGTAAATCTTGAAGAGATGTCCAAGAGAAAGAGGGAGTTCACCATGCTGGCATTAAtacttgtaaatataaaaagactGTTGTTCTCTATAAATGCCTGGAGATATTTTTAGACAAGTCACTTTCACCAGTATCatctttttattaattgtttgttcattttaacaacAGCACTGAATAAACgtcttacaaatgtatttgtgctcACCAGAAAGCCTTTTGGATAGAACTAGATTATTATCCCAAAACGCTCTGCCTGCTTATCTAAGCTTGCCTCAACTTGAGCTTAAATGCATTGCCTGTACTTTTTGGAGTATGAAGAAAACATCTGTAAAGCAAACAAATTCTTGTTGAAACAGTGCTAATTCACATTTTCACCTGTTTTAACATGGAATAACCATTTTCACATTGCCTGTGCAAAGAATATGCTAACATTATtccaaaaagttttaaattgtatattgtagCGTATACTGTCTTTGATACACAAAGTTAATTGCAGTCTTATTTTCTTGGGGGTATTGTTTCATCTgaatataatctgaaaatattcTTGTTTGTCAGATCTTCAACTTTCAGCAAAAGAGCTTTCAACAAAAATGCTTCATAGGAAATTGGTTCAATCAATGCCAAACCTTTCATCCAACTGTATGCAAGagattcatttatattttaattgattagaCACATGTTTGGTTTCAAAAAGGCATGCATGGAATAATATGGCAATTCATTATACAATAAAGGTGGGAGATGTTATATTGTGACTTCAAAATGAAGAGTAAACAGTGTACAATACACTATGAATTGCTTCTGTGagagtatttgtatttgtg

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010252 True 5825 mRNA 0.40 13 21081237 21105093

Neighbor

gene id symbol gene type direction distance location
AMCG00010256 NA coding upstream 33760 21028778 ~ 21047477 (+)
AMCG00010251 NA coding upstream 58536 21004289 ~ 21022701 (+)
AMCG00010249 NA coding upstream 120681 20956381 ~ 20960556 (+)
AMCG00010245 NA coding upstream 140273 20931331 ~ 20940964 (+)
AMCG00010243 LOC106562978 coding upstream 156567 20898450 ~ 20924670 (+)
AMCG00010250 NA coding downstream 300090 21405183 ~ 21422900 (+)
AMCG00010257 LOC103368378 coding downstream 424530 21529623 ~ 21530318 (+)
AMCG00010253 NA coding downstream 528312 21633405 ~ 21656223 (+)
AMCG00010255 rad1,LOC107718285,LOC107585563,LOC107743754 coding downstream 630078 21735171 ~ 21740568 (+)
AMCG00010254 brix1 coding downstream 635681 21740774 ~ 21746219 (+)
G79190 NA non-coding upstream 7163 21073536 ~ 21074074 (+)
G79178 NA non-coding upstream 28661 21050816 ~ 21052576 (+)
G79157 NA non-coding upstream 81225 20988160 ~ 21000012 (+)
G79118 NA non-coding upstream 308156 20769999 ~ 20773081 (+)
G79113 NA non-coding upstream 423403 20657349 ~ 20657834 (+)
G79259 NA non-coding downstream 426584 21531677 ~ 21532597 (+)
G79272 cks2,LOC107675750,LOC107653382 non-coding downstream 524065 21629158 ~ 21632876 (+)
G79355 NA non-coding downstream 897250 22002343 ~ 22002665 (+)
G79357 NA non-coding downstream 902298 22007391 ~ 22010144 (+)
G79380 NA non-coding downstream 939540 22044633 ~ 22045794 (+)
AMCG00010224 NA other upstream 1451798 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 1897168 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 1993483 19087329 ~ 19087754 (+)
G78743 NA other upstream 2159793 18919911 ~ 18921444 (+)
G78410 NA other upstream 3727749 17344419 ~ 17353488 (+)
G79382 NA other downstream 941025 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 1252876 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 1594649 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 2210922 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 2815667 23920760 ~ 24009853 (+)

Expression


Co-expression Network