AMCG00010279 (tnksa,LOC108436993,LOC108279024,LOC107706493,LOC107681059)


Basic Information

Item Value
gene id AMCG00010279
gene name tnksa,LOC108436993,LOC108279024,LOC107706493,LOC107681059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22651029 ~ 22694955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010279
ATGGCTAAGCTGCTCATGTCTTTAATTAGAGAAGTGCGCAAATTTTTCACTTTGATCTGGCCCCCGTTATGCTTGCTTGCTGTTAAGTCACCCTGGCCTTGCCTCCGTAATGAGCgctctcttcttttctttcagtCCACCCCTCTGCACCTGGCAGCAGGATACAACCGGGTGAGGATCgtccagctcctcctgcagcACGGAGCCGACGTGCATGCCAAGGACAAGGGGGGTCTTGTCCCACTGCACAATGCTTGCTCATATGGACATTATGAGGTCACCGAGCTGCTACTTAAGCATGGAGCCTGTGTCAACGCCATGGACCTGTGGCAGTTCACGCCGTTGCATGAAGCTGCTTCCAAGAACCGAGTGGAAGTCTGCTCTCTCCTGCTGAGCCACGGAGCAGACCCCACCCTAGTCAACTGCCATGGCAAGAGCGCAGTGGACATGGCCCCCACTCCTGAGCTGAAGGAGCGGCTCACCTACGAATTCAAAGGTCATTCATTACTACAGGCAGCACGGGAGGCTGATATGGCAAAAGTGAAGAAAACTCTCGCAttggaaattattaatttcaaacacCCTCAGTCTCATGAAACAGCACTGCACTGTGCCATCGCCTCGCCACACCCCAAACGGAAACAAGTCACCGAGCTGTTGCTGCGGAAGGGTGCCAACGTCAATGAAAAGAACAAAGACTTCATGACCCCGCTGCATGTGGCCGCTGAGAGAGCCCACAATGATGTTATGGAAGTGCTGCAGAAACATGGAGCCAAGATGAATGCCCTGGACACACTGGGTCAGACGGCCCTTCACAGAGCAGCTCTGGCTGGGCACCTTCAGACATGCCGCCTTCTCCTGAGCTACGGAGCGGACCCCTCCATCATCTCCCTGCAGGGCTTCACGGCCGCACAGATGGGGAACGAAGCAGTCCAGCAGATCCTCAATGAAAACATTCCCGTGCGCAACTCTGATGTTGATTATCGGCTCCTGGAAGCTGCCAAAGCTGGAGACCTGGACACTGTGAAGCAACTGTGCTCTCCGCAGAATGTGAATTGCCGGGATCTGGAAGGCCGCCACTCCACCCCGCTGCACTTTGCTGCCGGATACAACCGTGTGTCTGTGGTGGAGTACCTGCTGCACCATGGGGCGGATGTCCACGCCAAAGACAAGGGtGGCTTGGTTCCTCTGCATAATGCCTGCTCATATGGACACTACGAAGTGGCAGAGCTACTGGTCAGACATGGAGCTTCAGTCAATGTGGCCGACCTGTGGAAGTTCACCCCTCTGCACGAAGCAGCGGCCAAAGGAAAATACGAGATCTGTAAGCTGCTCCTAAAGCATGGCGCCGATCCTACAAAGAAGAACCGTGATGGGAACACACCTCTGGACATGGTGAAGGAAGGCGACACGGACATCCAAGACTTACTGAGAGGGGATGCCGCTCTTCTAGACGCAGCAAAGAAGGGCTGCCTAGCAAGGGTGCAGAAGTTGTGCAGCCCGGAGAACATCAACTGCAGGGACACGCAGGGACGCAACTCCACCCCCCTGCATTTAGCAGCTGGATACAACAACCTGGAAGTGGCAGAGTATCTTCTCGAACATGGGGCAGACGTTAACGCTCAAGACAAAGGGGGTCTCATTCCACTGCACAACGCTGCCTCTTACGGGCATGTGGACATCGCAGCTCTCTTAATAAAGTACAACACCTGTGTCAATGCCACCGACAAATGGGCTTTCACCCCTCTCCACGAGGCGGCACAGAAAGGCCGCACCCAGCTGTGTGCCCTGCTCCTCGCCCATGGGGCCGACCCCACCATGAAGAACCAGGAGGGACAGACACCGCTGGACCTGGCTACGGCGGATGATATCAGAGCACTCTTGATAGACGCCATGCCCCCAGAAGCCCTGCCCAGCTGTTTCAAACCCCAGGCCACAGTGGTCAGTGCCTCGGTCATCTCCCCAGCCTCAACGCCATCCTGCCTTTCGGCTGCCAGCAGCATAGACAACCTGACGGGTCCCCTGGCTGAGATGGCAGTCAGCGGGGCCTCCAGTGCAGCCGACGGAGCCACTGGTACAGAGAGGAAGGAAGGGGAAATAGCTGTGCTTGACATGAATATCAGTCAGTTCCTGAAGAGTCTTGGCCTGGAACACCTGCGGGATATCTTTGAGAGGGAACAGATTACATTGGATGTGTTGGCAGACATGGGCCACGAGGAGCTGAAGGAAATTGGCATTAATGCCTATGGACATCGTCACAAGCTAATCAAAGGCATAGAGAGGCTTTTAGGAGGGCAGCAAGGTGCAAACCCGTATCTGACATTTCACTGTGCCAGTCAGGGGACTGTGCTCATCGACCTGGCACCGGATGACAAGGAGTTCCAGTCCGTGGAAGAGGAGTTGCAGAGCACGATACGGGAGCACAGAGATGGAGGGAATGCAGGTGGTGTCTTCAGCAGGTACAACATCCTAAAGATCCAGAAAGTGGTGAATAAGAAGTTGAGGGAGCGCTACACACACCGACAGAAAGAGATCGCCGACGAGAATCACAATCACCATAACGAGCGCATGCTATTTCATGGGTCTCCATTCATCAATGCAATTATACACAAAGGCTTTGATGAGAGGCATGCTTACATCGGGGGGATGTTTGGTGCAGGGATCTATTTCGCCGAGAACTCCTCTAAAAGTAACCAGTATGTATATGGGATCGGAGGAGGAACGGGCTGTCCCACACACAAGGACCGATCCTGTTACATTTGTCACAGACAAATGCTGTTCTGCAGAGTGACCCTGGGCAAGTCTTTCCTGCAGTTCAGCGCCATGAAAATGGCCCACGCTCCACCCGGGCATCACTCCGTCATCGGCCGGCCGAGTGTGAACGGCCTGGCGTACGCAGAGTATGTCATCTACAGAGGTGAACAGGCTTATCCAGAATACCTCATCACATACCAGATCCTGAAGCCAGAGAGCACCCCCCAGACTCCAGCAGGCGCTGAGCAGAAGTCCTAGTCTTCACACGCCGAACCCTAGGCTGAGAGGCTTTGGCACCACCGTGGGGCTGTGATCCAGTACTGCAGATCTAGAGACTGTTACTAAGCTTCATATACATTCTGGGAGCTTGCAGATAAGCTAGTGATTATCTTTggtgaaagttttattttatttttattttttgtcgtCGTTTTTTTCACCGAAGATGAGACTTTTGGGTTGTAAACTGCCACCATTTCCTTTTCGAGAAAGTGTTTACAAAGGTTGCCTTTACAAAAATTCACTCCAGCTCATTTTCAGGCCCAACCTCTCCCCTCCagcagtgtctttttttttttggttgtgtttttcagaagaataaaaacagcTCCAACAGCAGGCGTCTTCAATATTTAGGAACAAAACTggcaaaaacaagaaataagcctttggtcttttttttttttttgttagtttgtttttggttgttctGTTTGGTTAGTTGGAAATACTACTAGGGAGCCTGCTTAGCAGTCAGAAAACAAGGGCTTGgaccaaaacaattaaaacctgCTGTTTCTTCACACTAAAGAAGTGTCTGCGGTGACACTAGTAGACTGTGGTCAGGGGTGAAGGGCTAGTAGCTCCTGGTTTCTGGGGAGCAGCTAGTCTGATTGGATGACCTGACGTTCTTGTAGCTTTTACCACtacatcacttttttttcttcagtttcctttttttaagcccataaataatggcatttgcattttaatttatttagctctaattttttataatttctttttttaaatctagtttTTAGATCGCATACTCTCCTGATACCGACCATTTCTCACAGTTTGCCTCACAGAGACCCTAACTtatcattttttacttttttactgaTGAGTGCAAAGGCCTTGATATCAACTTACATTTAAGGGTAACATTATACTTTTTAGTTTAATTCCTAAGAATGTTAACTTACAGAAGCAGATTCCGCAGTGGGTAGAGAGGTGAAAATGAGTTGAATTCaatggaaaactgaaaatgagCTCGAGTACTcttgacaatttattttgtttatttctttgcacAAGGAAAGATGCCTAGAACACATCGAGAACTGCAATGCCATTGTCTTATCCACAGAGTTCAGAGTTTTAAAGGATTTGCACTTTTAAAGAGGAAAGATTTGAGTTATTGTAAGAATCAAAATAATgtcatgttattaaaaaaacaaagcaaaatgttcATTACTGTACAGGTTGTTTAAATGACAGTGCCCTGTTACGCTTTTGATGTTGTTTACTGATAAGGTTTGGGTTTTATTAGTACTGTAAATGAAGTCGGTTTTGATTTTGaaccttttctttttgcaaaGGGGTCTGCCTCATCTTCCGGGTGAGCtggtctgttttcaatttatttgtttattttagttttgaataaACGTACTTGTAGGAAGATGTGCCTCTCTCAACGTCGGCTTGCCAGAattattcatttagttttgtgtttttgttttgtttgttttccttgtttttttttNNNNNNNNNNttttttgttgtttgttgttattcatttttaaaactcaaTCTCTCTGTGGTGTTCAACACTTTTAACACTGGAACAGCCTTCTAAAACCATATGTAACCCTGGAGACTTACTCTTTGACATCCCTGACTTGCTTCTTCAGACATAGATGGCTTTGCCTTGCACTAGGACTAATTAGGATGTGTTAGGTACTGTCTttgactgaaaaaataaatcatcatcatggaaaaaaaaacaatacacaaatgaACAGGGAGGGTGAAGAAGCAGTTTTAGAAAGTCTGAGAAAAGGTGCCTGCAGGAAGTAGATGCACGTCAAATCTTCGTTCCATACACCGAAGGATCCAAGCATAGTTACATCGCTCGGcgtttctcctctcctctgttgTTGTCAGTCTGTAAGATGTCCTTTTCCTGCCCTCTATGAGCTTGCATTTCAGGCAGGCATTAAACGGAGTCAAAGCTGTtgcttccccccctccctccgtCCCCCACCTTCCCTAATTTCACCCCTGTCTGAAGGACACGCAGAAGACAGTATTTCTCCACTCAATCCCAGCTTCTCCAGTGGACCCCTCTCCATGTAATCAGTCCCGGGAACACTCGGCTCTCCTTTAGCAGCCTGATTGTGATTGcaacaatttttttaatgactgaaCAGAAGTCATGCATTGACTATTAACCctggaagaaaagagaaaaaataatagggATCTGAAGACTACTTTAACACTCCTCAACCTTGTAAAGCAgtcttaataaaatacacatggcAC

Function

symbol description
tnksa Predicted to enable NAD+ ADP-ribosyltransferase activity. Predicted to be involved in several processes, including positive regulation of canonical Wnt signaling pathway; positive regulation of telomere capping; and protein localization to chromosome, telomeric region. Predicted to act upstream of or within Wnt signaling pathway; positive regulation of telomere maintenance via telomerase; and spindle assembly. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; dorsal telencephalon; hypothalamus; medulla oblongata; and preoptic area. Orthologous to human TNKS (tankyrase).

NR:

description
PREDICTED: tankyrase-1

GO: NA

KEGG:

id description
K10799 TNKS; tankyrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010279 True 5308 mRNA 0.47 23 22651029 22694955

Neighbor

gene id symbol gene type direction distance location
AMCG00010278 tnksa,tnks,LOC107706493,LOC107567652,LOC107591704,LOC108279024,LOC107667582 coding upstream 109197 22530130 ~ 22541832 (+)
AMCG00010272 NA coding upstream 554099 22079288 ~ 22096930 (+)
AMCG00010266 myl5 coding upstream 630071 22017684 ~ 22020958 (+)
AMCG00010261 NA coding upstream 764891 21880507 ~ 21886138 (+)
AMCG00010258 NA coding upstream 810126 21831125 ~ 21840903 (+)
AMCG00010281 LOC108436681,LOC105014741,LOC106568256 coding downstream 200965 22895920 ~ 22917724 (+)
AMCG00010283 idua coding downstream 310289 23005244 ~ 23044243 (+)
AMCG00010282 pde6b,LOC108436964,LOC108232538,LOC107706500,LOC103473654 coding downstream 362665 23057620 ~ 23076233 (+)
AMCG00010290 NA coding downstream 415156 23110111 ~ 23138342 (+)
AMCG00010291 k0020,pum3,LOC107705054,LOC107742987 coding downstream 445527 23140482 ~ 23157907 (+)
G79443 NA non-coding upstream 175046 22475437 ~ 22475983 (+)
G79427 NA non-coding upstream 266897 22379763 ~ 22384132 (+)
G79415 NA non-coding upstream 401197 22249631 ~ 22249832 (+)
G79414 NA non-coding upstream 415765 22235015 ~ 22235264 (+)
G79394 NA non-coding upstream 579536 22069423 ~ 22071493 (+)
G79476 dusp4,LOC107703586,LOC107708543,LOC107591703,LOC107589246 non-coding downstream 9834 22704789 ~ 22705108 (+)
G79508 NA non-coding downstream 393142 23088097 ~ 23088362 (+)
G79509 NA non-coding downstream 401636 23096591 ~ 23096838 (+)
G79567 vldlr,LOC106568141 non-coding downstream 491099 23186054 ~ 23188182 (+)
G79572 NA non-coding downstream 524582 23219537 ~ 23220917 (+)
G79420 rpl17,LOC107579731 other upstream 272220 22357969 ~ 22378809 (+)
G79382 NA other upstream 603487 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 3021590 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 3466960 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 3563275 19087329 ~ 19087754 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 4787 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 621060 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 1225805 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 2138116 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 3297603 25992558 ~ 25996414 (+)

Expression


Co-expression Network