AMCG00010292 (rchy1)


Basic Information

Item Value
gene id AMCG00010292
gene name rchy1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23316015 ~ 23329546 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010292
ATGGCCGCCTCTGCGTTTGGATGCGAGCATTATGTGCGCAGCTGCTTGCTGAAAGCTCCATGCTGTGGCAAGTTTTACGTGTGTCGCCTCTGTCATGACGCTGAAGAACAACATAATCTGGATCGCTTTCAGGTGCAAGTCGTCAAATGCTCCGTGTGCAAGAAAGTCCAAAAGGCACAGCAGACATGTGAAGAGTGTGGCATCAAATTTGGTGAATATTACTGTGATGTCTGTCACTTGTTTGACAAAGACAAGAAGCAGTATCATTGTGAACAGTGCGGGATATGTAGGATTGGCCCAAGGGAAAAGTACTTTCACTGTCAGAAATGCAATCTCTGCTTAGCCAGTGACCTACAGGGAAATCATAAgtgtgttgaaaatgtgtccAGACAGAACTGCCCTGTTTGTATGGAGGATATTCACACATCAAGAATTGGAGCGCATGTATTGCCATGTGGTCACCTGCTTCACAAGACCTGTTTTGATGACATGTGTAAAACAGGtgcatACCGATGTCCACTGTGCATGCATTCGGCGTGGAATATGGACAATTGTTGGGAAGACCTGGATAAAGAAATATCTCATACACCAATGCCACCGGAATATCAGGATGTTACTGTGAAGATCATGTGTAACGATTGCCAGACTCACTGCACAGTGCTTTTCCATGTTCTGGGAATGAAGTGCAGCAGCTGTGGATCCTACAACACCGCACAGGATGGTGGGCTAATCCCccgacagcagcagcagcagcaggaacaacaacaatgatCTTAAACGAGTTATTGCTAGTGTAAGCCTTGGACATTTTAGTTCTTCCAGCTCACAAAATATATTGGTAATGTACTCTGACAGTTATTcagacagattaattaaatattaggATTACTGCACCTGGGCATATTTCATTGGTTTTGATTTGCTTACGTTTCAACTGATTAATTTGCACAGGAGTCATTCgacttgttttattaaatttcaaattgaaaacctAACACACGGCCTGGCATTCATTCAGACTGATCCCTTCAGTATGTGGAAAGGTGTGAggtacattttgtattcctgCTGGTTAACCTGAACCTTTCAATCTTAGTATTAAATCACTGTTTCGGCAACATTTCAGTTTGTGAGTAAACTAATAATAGTTTAATGTAGCTATATAGTTGAAATGGCTGAAAGAACCTTCTTGTAGCAGTACAGTACCAGTTAAATCCTGAAGAACCTGGATATTCCATTCTGAGATCTTCCACTTTGAGAACatttgcttttgtctttgtaaacactttgttaattatttgttaCTTGTCAGGTTTGTTGGGACTTTCTCTTACCAAGAAAATATAATGTCTAGGGACTGAATGTGAAATGTTAATACTTGATCCATTCTCACTGTACTTAAAGAGACTTAGGACcatatttaaactttaaattcttttaatgtaatgtcccttttttaaacaataggaaaaccaataatttaatttcttgtttaattttattaagtTGTGTATGAGACTccagttattttttgttgttttttcctccctcGTTATGAAAACCAGGCGTTGCCATGAGGGTTCTATGAATCTGTCCCATAGTCGATTGTCTTGCATTGATTAGAGGTAGTAAAGTACAAAGTTGTGGTAAGTTTATCACATGCCAGTGTTAATAGTCATTGCTAGGGGAATGTGTAGAGTCTATTTAGACTTTCAGCGCTGCCATTTGGGGATCAGGATCAGGACAGGCCACAATGTGGATTCGGTTTTCTGGTCTCAGTTTAGCCTGtataaaataatggtaaaaCCACAACACAGTTCGGCTCTTCAAACTGTGGCAGTTTGAAACAGGGATAATGTTTCAGCTTTGTGTGCTGTTCCTACTTTctgcaaacatacaaaactggcattcatgtttgaaaatatagaATTAAACCATTAGGATATAGGATGCCATAGATTACTATCTGGCATTTCTTTGCACTGTTCTTTGTTGAATTAGCACTACATAGCCATGTATGACAGTGATCATTGGTGAAATGCTTGTGTTGGTTTGCAGCTTTTGCTCTTGTAAGGTGAAACATaaatattctgcatttattGACCTCTTtggtgttcatttatttatttttttctcatgagTTCACATTGGTTGAACTCCGAAATGTCTAATTTATTAATCGTATgatattgttaaataatttcTTGGACATATAACATGTTCAGTAATAAGACATGATctactcaattaaaaaaaacagctgtcatTTATGAAAGTAATCGGTGTCGATATTATGTTCGTATTATATTCTCCAAAGCTTTACTCATATGTTATGCTTATTAACAggtttaatttcttaattagaAATCAACTGAACACACAGAGTATACTTCTGtttcactcatttatttttgtaacccATAATATATTCCATCTTGGGAAGCAGAATAAAAGTGAATTACAAAGGTGCTTTGCTCCTGTTGTGTGAAATGCAATGCGGATGTGTTTCCAGTGGCTTCTGCTGGTAAAGAATAGgctaataataaacacaaaatgacaaaatatgtcCAACTTTGCAGTTAATTTCAATTCTACAGAGATGGTTTCATACTATGCCTGTGCATTTATAGCATGCATAGATAGGATAGTAATATTCACAGATATTAGATGGAG
>TU99260
CTCTTGCTTACTTGACGTGTTTTACCTCAACAGAGGGGACATGCGTGCGTGAAACACCACAGTGAAAATGGCCGCCTCTGCGTTTGGATGCGAGCATTATGTGCGCAGCTGCTTGCTGAAAGCTCCATGCTGTGGCAAGTTTTACGTGTGTCGCCTCTGTCATGACGCTGAAGAACAACATAATCTGGATCGCTTTCAGGTGCAAGTCGTCAAATGCTCCGTGTGCAAGAAAGTCCAAAAGGCACAGCAGACATGTGAAGAGTGTGGCATCAAATTTGGATTGGCCCAAGGGAAAAGTACTTTCACTGTCAGAAATGCAATCTCTGCTTAGCCAGTGACCTACAGGGAAATCATAAgtgtgttgaaaatgtgtccAGACAGAACTGCCCTGTTTGTATGGAGGATATTCACACATCAAGAATTGGAGCGCATGTATTGCCATGTGGTCACCTGCTTCACAAGTATGTTTGTCCTGTCAAATATTCTATTGAATCAGTGATCCTTGGAGCTAAACACTTATCAGCACTTATCAAAGATTAAAAGCCAAGGTTAAGGAGACCTTTACATTTGTCCTCAGGAACCACTTGAGAACCAAGCATTTTGCACTAAGATGCTCTCCTGGTAccaaaattaattttgttttggctGTATTTGACTGACGAC

Function

symbol description
rchy1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Is expressed in several structures, including axial chorda mesoderm; cleithrum; lens; notochord; and solid lens vesicle. Orthologous to human RCHY1 (ring finger and CHY zinc finger domain containing 1).

NR:

description
PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010292 True 2673 mRNA 0.38 9 23316082 23329546
TU99260 False 663 lncRNA 0.44 6 23316015 23326607

Neighbor

gene id symbol gene type direction distance location
AMCG00010293 NA coding upstream 2555 23309509 ~ 23313460 (+)
AMCG00010291 k0020,pum3,LOC107705054,LOC107742987 coding upstream 158108 23140482 ~ 23157907 (+)
AMCG00010290 NA coding upstream 177673 23110111 ~ 23138342 (+)
AMCG00010282 pde6b,LOC108436964,LOC108232538,LOC107706500,LOC103473654 coding upstream 239782 23057620 ~ 23076233 (+)
AMCG00010283 idua coding upstream 271772 23005244 ~ 23044243 (+)
AMCG00010297 NA coding downstream 116571 23446117 ~ 23450175 (+)
AMCG00010298 klhl8 coding downstream 121646 23451192 ~ 23466316 (+)
AMCG00010300 NA coding downstream 146852 23476398 ~ 23478378 (+)
AMCG00010299 NA coding downstream 151337 23480883 ~ 23511626 (+)
AMCG00010301 NA coding downstream 267771 23597317 ~ 23627422 (+)
G79572 NA non-coding upstream 95098 23219537 ~ 23220917 (+)
G79567 vldlr,LOC106568141 non-coding upstream 127833 23186054 ~ 23188182 (+)
G79509 NA non-coding upstream 219177 23096591 ~ 23096838 (+)
G79508 NA non-coding upstream 227653 23088097 ~ 23088362 (+)
G79476 dusp4,LOC107703586,LOC107708543,LOC107591703,LOC107589246 non-coding upstream 610907 22704789 ~ 22705108 (+)
G79596 NA non-coding downstream 3718 23333264 ~ 23333473 (+)
G79597 NA non-coding downstream 8426 23337972 ~ 23338206 (+)
G79658 NA non-coding downstream 201088 23530634 ~ 23533701 (+)
G79660 NA non-coding downstream 299079 23628625 ~ 23630604 (+)
G79673 NA non-coding downstream 309507 23639053 ~ 23675957 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 612606 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 937206 22357969 ~ 22378809 (+)
G79382 NA other upstream 1268473 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 3686576 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 4131946 19138003 ~ 19184069 (+)
AMCG00010320 LOC104946060 other downstream 591214 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 1503525 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 2663012 25992558 ~ 25996414 (+)
G80014 NA other downstream 2682938 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 3050921 26380467 ~ 26403020 (+)

Expression


Co-expression Network