AMCG00010322 (st8sia3,LOC106580045,LOC105014695,LOC106572171,LOC106585377)


Basic Information

Item Value
gene id AMCG00010322
gene name st8sia3,LOC106580045,LOC105014695,LOC106572171,LOC106585377
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24197476 ~ 24214335 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010322
ATGGTCCGCATAGCAAGCGCGCTGGGTTTGGTCATGCTAAGTGTGGCTTTGCTCATTTTATCTTTGATCAGCTACGTGTCAATCAAAAAAGATAATATCTTCACCACCCCAAAATATGCCAACTCGGGGGGTCCGAGGATGTCACAGTACGCAATGAAGTTTCTGGATCCATCTTTCATCCCCCTTACCAATGCTCTGAATGAAGAACTGCAAGAAAAACCCTCAAAATGGAAATTTAATAGGACAGCATTCTTAATGCAAAGAAAGGAAATCCTACACTACATCGATGTGGCCAACAACTTCTCCCTGATCAAGAACGGTGTGCGAGTGGGCCAGCTAATGCACTATGACTACTCTAgccataaatatgtattttccattaGCAATAATTTCAAGTCTCTTCTTCCTGATGCCTCCCCCATAATGAACAAGCATTACAACGTGTGTGCCGTGGTGGGGAACAGCGGAATCCTCACAGGAAGCCAGTGCGGGCCCGAGATAGACAAGTCAGACTTTATCTTCCGCTGCAATTTTGCTCCAACTGAGATTTTCCATAAAGACGTAGGGAGAAAGACCAACCTCACGACCTTCAACCCCAGTATCCTTGAAAAGTACTACAACAACCTCCTAACAATCCAAGACCGCAATAACTTCTTCCTTAGCCTAAAAAAGCTGGATGGGGCTATACTTTGGATCCCAGCTTTCTTCTTTCACACATCAGCAACTGTTACCAGAACCTTGGTGGATTTCTTCGTGGAACACAAGGGACAGTTAAAAGTGCAGTTGGCTTGGCCAGGGAATATAATGCAGCATGTCAACAGatactggaaaacaaaacacctatCTCCGAAGCGCCTCAGCACTGGCATTCTCATGTACACCCTGGCATCAGCAATGTGTGAGGAGATCCACCTCTATGGGTTCTGGCCCTTTGGATGGGATCCTAACACTGGGAAAGAGCTGCCCTACCACTACTATGACAAGAAAGGGACCAAGTTCACCACCAAATGGCAGGAGTCTCATCAACTTCCAACTGAGTTCAAACTCTTGTACAAAATGCACGCAGAAGACATAAGGAAGCATaatttcCTTCGAGGGGCCACATCACATTTTGAG

Function

symbol description
st8sia3 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Acts upstream of or within muscle cell cellular homeostasis and muscle organ development. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; nervous system; pleuroperitoneal region; somite; and unfertilized egg. Orthologous to human ST8SIA3 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3).

NR:

description
PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like

GO: NA

KEGG:

id description
K06613 SIAT8C; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010322 True 1116 mRNA 0.45 6 24197476 24214335

Neighbor

gene id symbol gene type direction distance location
AMCG00010321 wdr7 coding upstream 73853 24081293 ~ 24123623 (+)
AMCG00010319 atp8b1 coding upstream 279870 23897773 ~ 23917606 (+)
AMCG00010314 NA coding upstream 336776 23857680 ~ 23860700 (+)
AMCG00010313 NA coding upstream 361008 23812550 ~ 23836468 (+)
AMCG00010315 shroom3 coding upstream 411122 23774521 ~ 23786354 (+)
AMCG00010323 onecut2,LOC106572165 coding downstream 14213 24228548 ~ 24229774 (+)
AMCG00010324 NA coding downstream 36665 24251000 ~ 24251582 (+)
AMCG00010325 txnl1 coding downstream 96026 24310361 ~ 24317700 (+)
AMCG00010328 NA coding downstream 399739 24614074 ~ 24625298 (+)
AMCG00010329 NA coding downstream 421822 24636157 ~ 24642653 (+)
G79749 NA non-coding upstream 312669 23842459 ~ 23884807 (+)
G79752 NA non-coding upstream 344040 23851026 ~ 23853436 (+)
G79675 NA non-coding upstream 499228 23688730 ~ 23698248 (+)
G79673 NA non-coding upstream 521519 23639053 ~ 23675957 (+)
G79660 NA non-coding upstream 566872 23628625 ~ 23630604 (+)
G79820 fech non-coding downstream 56940 24271275 ~ 24275684 (+)
G79827 nars,LOC105905856 non-coding downstream 81053 24295388 ~ 24298215 (+)
G79829 nars non-coding downstream 85964 24300299 ~ 24301869 (+)
G79846 NA non-coding downstream 386797 24601132 ~ 24650632 (+)
G79849 NA non-coding downstream 509499 24723834 ~ 24727757 (+)
AMCG00010320 LOC104946060 other upstream 187623 23920760 ~ 24009853 (+)
AMCG00010292 rchy1 other upstream 867930 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 1494067 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 1818667 22357969 ~ 22378809 (+)
G79382 NA other upstream 2149934 22046118 ~ 22047542 (+)
AMCG00010333 NA other downstream 618736 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 1778223 25992558 ~ 25996414 (+)
G80014 NA other downstream 1798149 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 2166132 26380467 ~ 26403020 (+)
G80249 NA other downstream 3342080 27556415 ~ 27557007 (+)

Expression


Co-expression Network