AMCG00010323 (onecut2,LOC106572165)


Basic Information

Item Value
gene id AMCG00010323
gene name onecut2,LOC106572165
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24228548 ~ 24229774 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010323
ATGAAGACTGCCTACAACGCCTATAGATGCCTGGCCAAGGATTTGGATGCTTACGCCATGAACCCAGAGATGACAATGGACAGCATTGGCAATCTGCATGGTGGAGTAAGCCATGAGCAGGATTTGATGAGCAGTCACAGTCCCCACCACGACCGGAACACGGGGGCTTCCTTGCGGATACATCAGGATTTGGCCACGGCATCTTCCCGGTCCGCTATGGTGTCAAGCATGGCTACGATTCTGGACGGGGCTGGAGAGTACCGTCCGGAATTGTCTCTGCCGCTCCATCACGCCATGAGCATGCCGTGCGACACATCCCCACCTGGGATGGGCATGAGCGGCACCTACACCACGTTAACTCCACTCCAACCCCTGCCCCCCATTTCGACAGTTTCGGACAAATTCCACCACCCTcatcaccaccatcaccaccaccaccaccagcgtCTCTCTGGGAACGTAAGCGGGAGTTTTACGCTGATGCGGGATGAAAGGGGTTTACCAGCAATGAACAATCTCTACAGCCCCTACCATAAGGACATGACAGGGATGGGTCAGAGCTTATCCCCCCTGGCCAGCAGCCCCCTCGGCAACGGCTTGGGTTCCATCCACAACACCCAGCAAAGCCTCCACAACTATGGCACGCATGGGCACGAAAAGATGCTGAGCTCCAACTTCGATGCCCACACGGCCATGCTGGCCAGAGGGGATCAGCACCTCTCTCGAGGCCTCGGTGGCCCCTCAGCGGGTATGATGCCCCATTTGAACGGTATGCACCACGCTGGGCATCCGGGCCACCCTCAATCCCACGGGCCTGTGTTGGCTTCCAGCCGGGACAGACCGCCCTCCTCCTCGGGAACGCAAGGTAACAACTCGGGTCAGCTGGAAGAGATCAACACCAAAGAGGTGGCACAGAGGATCACGGCGGAGCTGAAGCGGTACAGCATCCCCCAGGCCATCTTCGCCCAGCGGGTACTGTGCCGCTCGCAGGGTACCCTTTCCGACCTCTTGCGGAACCCCAAACCTTGGAGTAAACTTAAATCTGGAAGGGAGACATTTAGGAGAATGTGGAAATGGCTGCAAGAACCCGAGTTCCAGAGGATGTCGGCCCTACGGCTTGCAGGTAAGACAAGGTATCCTAATAAAAGCTCTATTTATGGACTTGACCACATCCTGCAGATTCATACTACTCTGAAACCTTCCACTAAAACAGAGTTCGTGGATTGA

Function

symbol description
onecut2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain and retina. Orthologous to human ONECUT2 (one cut homeobox 2).

NR:

description
PREDICTED: one cut domain family member 2 isoform X2

GO: NA

KEGG:

id description
K24170 ONECUT2; one cut domain family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010323 True 1227 mRNA 0.56 1 24228548 24229774

Neighbor

gene id symbol gene type direction distance location
AMCG00010322 st8sia3,LOC106580045,LOC105014695,LOC106572171,LOC106585377 coding upstream 14213 24197476 ~ 24214335 (+)
AMCG00010321 wdr7 coding upstream 104925 24081293 ~ 24123623 (+)
AMCG00010319 atp8b1 coding upstream 310942 23897773 ~ 23917606 (+)
AMCG00010314 NA coding upstream 367848 23857680 ~ 23860700 (+)
AMCG00010313 NA coding upstream 392080 23812550 ~ 23836468 (+)
AMCG00010324 NA coding downstream 21226 24251000 ~ 24251582 (+)
AMCG00010325 txnl1 coding downstream 80587 24310361 ~ 24317700 (+)
AMCG00010328 NA coding downstream 384300 24614074 ~ 24625298 (+)
AMCG00010329 NA coding downstream 406383 24636157 ~ 24642653 (+)
AMCG00010330 NA coding downstream 443438 24673212 ~ 24704825 (+)
G79749 NA non-coding upstream 343741 23842459 ~ 23884807 (+)
G79752 NA non-coding upstream 375112 23851026 ~ 23853436 (+)
G79675 NA non-coding upstream 530300 23688730 ~ 23698248 (+)
G79673 NA non-coding upstream 552591 23639053 ~ 23675957 (+)
G79660 NA non-coding upstream 597944 23628625 ~ 23630604 (+)
G79820 fech non-coding downstream 41501 24271275 ~ 24275684 (+)
G79827 nars,LOC105905856 non-coding downstream 65614 24295388 ~ 24298215 (+)
G79829 nars non-coding downstream 70525 24300299 ~ 24301869 (+)
G79846 NA non-coding downstream 371358 24601132 ~ 24650632 (+)
G79849 NA non-coding downstream 494060 24723834 ~ 24727757 (+)
AMCG00010320 LOC104946060 other upstream 218695 23920760 ~ 24009853 (+)
AMCG00010292 rchy1 other upstream 899002 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 1525139 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 1849739 22357969 ~ 22378809 (+)
G79382 NA other upstream 2181006 22046118 ~ 22047542 (+)
AMCG00010333 NA other downstream 603297 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 1762784 25992558 ~ 25996414 (+)
G80014 NA other downstream 1782710 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 2150693 26380467 ~ 26403020 (+)
G80249 NA other downstream 3326641 27556415 ~ 27557007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019271 onecut2 coding NC_007132.7 CM002905.2 1698232 ~ 1742159 (-)