AMCG00010330


Basic Information

Item Value
gene id AMCG00010330
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24673212 ~ 24704825 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010330
TTTGTAATCTGTTCCACATATAAAGTTTATCTATTCTCTGAAGGCTGCCGCAGACTGCACAAACAGTCCCCGTTGAAGCCAGCGCTTAACCTTAGGATTGGCAATGAAATATAGACAACATTGTACAATTACcctgttgttattttcttctacaTTCAATCCAGAAAACACTAACGAAGGGGACAGCCTTTCAGGATGCTTTCAGGGAGTATTCAGGGAATAACAATTAGCTCGCGCAAAACAGGAGCCCAGTCAATGAGAATGAATAATGCAGATACACCCCCTGGGATGGTCAATGATGTTCCCCTCTCACTGCTAAATCTGAAAGAGCTGCTGGAGAAGAAGGTGGAGATCTTTCAAAAGACTGTATCCAAAGAGGAGCAGAAAGCTGAAGCAAAGCCAGAAGCCATCTTCAGCAAACTCGGATGTCTGCAAAAGTACATTGTCCAAAGTCGAGAGTTTTCCATACATTTCAGAGACCTAAATAGGGAGACCGAGCAGGAAGTCATTCGAGTAGGCCAACGACTCAGAGAACTGAGGAAGCAGCAGGAACAACTAGGCTGTGAGTTAAAAGATTTGGACAGACAACTTTCCGAGACTGTGACCCAGCTGCAGAGAAACCATTCCATTGAGCTGGTGAGAGTGCAGCAGCTCACAGAAGAAGCCATTGCCAGAAAGGAAGTGCAGGTTTTGCATCTcaaagagcaggaggaagacctgACAGCCCTTCAGGCGATGCTGGGAGAAGACGTGCAGCGATACGAAGAAGAGGCCAACCATCTTCAGAACTTCTCAGACAAACTGTCCAGTGAAATGGAGGGAGACAGCCAATCCAGGCCAGAGAAGAGCGTGggAACTGTTGGCAAGGAGACTAGAAGAGCCACGGAAAATGGCGTATCTGTTCAACAACAAGCAGATAGTCATTCGCTTCATCAGAACCAGATGGAAAAAGGGCTGCCTTCTCACTCTGTTACAGGACACAGCAGCACTCAAAATGGAGACAGTGTTGTATCCTCCAAGTCACCTGGtggcaaacaaactgaaagcatTACTAGAGAGGCCCCTTCCAGTGCTGAGCTTCACACGAAGATGGCTTCGACAAACAGAAGTGCATCTTTCAAGAAGGAAACTAATTTGAAACGGTCAGGCAGTGTAAAAGATCTCATTTATAAGTTTTCTGGAAGTGAAAATGGCAAAACATCTCCGACTGTGACTGGTGATCACAAGACCGAAAGGAAGTCCTTGGAAAAGAGTGGTTCAGACTCTGAGTTGATGgtggaggagaagaggaagcCAGGAGGTATTAACTCCCTGTTCAGTAAGAGCGATGGAGGGACACTGAGTGACCAGAGGAAAACCAGCAACAATGAGAGTGTGCTGCCCACTATCAGTGTGATACCTGCACCAGCGATATCAGTATCTGAACAAAACACCTACCAACACAATGGATCTCGTTCTCTTGAAAATCTCTCTGGGTCCAATTTTTCTGGCCAGAGCAACCCAGCACCGGACACGTCTCAAAACAGGGGCAGTCTTCTCACTGGGTCAACAGAGATCCCACTGGCGTCAGAGCCAAGTGGGAAAGTTTTGATGAGTGGCATAGACAGCCCATCTCGCGTATTCAACAGCCCCTATAAGACACCATCTCTTGACTATGATCGAATCAATAGAATCTCGGAGTATAAGAGTATGCCAGTTCTGTCCCCTGCCACATCTGAAATCAGTCTCTTCAACAGCAGAAGCAGTAGCCCTGTTCCCTCTCCCACAATGCTTTCCCCTCGCAGTCGATTCACTGCCTATGACACCTGGAACAAACAGAGGGCGGTAATGACTAGTCTGCCTGCACTGAGACCTGGAGTTCACAACAAACGAGATTATATTGAAGAACTCACACGGCTTTTAGACAACTGTCAAAAGAGGAACCAGTTTCTGGAGGCAGAGAGTGTGGAGATGAACAAGGAGAGGAACCAGATCCGCTTCGAAATGAGAGGGCTGTTGGTGAGCAACGAGGACATGCTCAGGACAAATACCCAGCTGCAAGGAGAACTGAAGAGGGTGATGGATAGAGTGGTGGAGTTggaaagagaaaacacaatGCTGAACGACCGCTTTGCACACATGGAGgaaaacatggagaaacaaaatcagcaaACCCAGGATCTTTCTGAGAAACTGTGGCTGACAGAGCGGAAAATGGAAGAGCttgaaacagaaaagcagaacCAAGACAAGATTATTGTTGACCTGAGAAACAAACTGGGAGAGGCtctccagatctcaacccagtccACAGCTGAGTTGAACCTGTTCCAGAAGCTGAAGAATGACTCCCAGCAGCGAGTTGCAGATCTGGAGGAGAACCTTCTGCAGAGAACACAGGAGTTGCAGAAGGCCCAGATGATTGTCAACCGATTACAAGGAGAGgtGTCCGGTAAGCTGATTGACAAGGAGAGGTCTCTGGAGGAGGAGATTCAGCTGCGGGAACGTCTGCAGCTGCAGTGCAAGCAGGCCGAGAGGAGCCTGGAAGACCTACAGATGGAGGTCCAGACTGCAGTCCAAGCCAAAGAGGACATTGCCAAACACCTCAAACTGGCACAGGAAAAGATGATTGAACTGGAGAGCGACTTGGAAGAAATGCATGACAATGAACAGAGGTGGGCTGTCAAGAACAAGAGAGCCCAAGAACAGATGGATCAACTTCAGCTAAAGTTGATACAAGAAAGAGATTTGAGGGAACAGCTGGACTGTGAGAAAGTGATGCTGGAGAGACAGATCAGGGACCTGAGAGTTGAGGTTCACGAGCTGCAGAACTCCAAAGTGCAGGAGGATGTCATGAATAAAATCATTCTGACGAACAACATTGGGAAACTGGAGAGAAAGATTAAAGAGCTGACTGACCAGGTGGAGGAAGAACACCGCCTGGCGGAAGAACAGAAAGACCTGATGACCCAGCGGATGCGCACCTTGAAACGGCAGCTGAATGAGGCCGAGGAGGAGATGAGCCGCAAAGAGACGCAGTTCCGACTCTCTCAGAGAGAGCTGTCGGAGGAGCGCGAGGCCATCAGCCGTCTGCAGAGGCAGCTCCTGGACCAGCAAGTCCAGATAAAGCGCAACGAGTCTCTTAAAATGAGGCAAGCCCTGGACAACTTCAGACTGGACCTAGACAGTCAGGATGAAGAAGAGGGCTCTTCAAAGCAACAAcccacacattttatataatgttcTTAATATACCAGCTTTAATAGTATCTGCAATACCTACTAGGAGGAACCCCTATTCTCACAATCTCCATCACTTAATTGTCTGAAATAAggaaacgtttttttttttgttttttttttaatctaaggACTTCCCaagcacacacatttttaatcgGTTAATTATTAACTGAGGAATCATAAACTGGGTACATTTCCAGAATCTGGATGAATCTCTAGAATGGCAGACTTTTATATTATGTTGGGATTTTCTGGGGTTGCTTAAATGAGTCTGCAGGGAAAATGtacccccaaaaaaaaatatatatatgtaaataatgttcAGTACTTCTTTCTGctatgttgttgttgctgctgcaatataaatgcatagggagggattattattattatttttttctttagtcaTGAGCTTTCTTTTggaatataattgcatttttgcaTGATCTTTTAGAGAAAGTATTTAGTCTTAATTCAAGAATTGTAATAGTTTGGATGTATAAGAGCAAGGTCTGCTCAGAAATCTATTATATATCTAAACATCTGAGGAGTTGACAGGGATTTGTATCATTATGATTTGCAGCACTAAGATGCACTTCCATGTGGTTTCATTGAACAAGATGCTGAACTGTATGTTATTAAAGCTGTTTTGCACGTGGAAAAAGCTTTCTTCATGTGCACCCTCACCTATCCATGCTTTACCCTCTTAAACCCGACTCCAGCCATGGACTGAGCTCAAGCAGACCACAGAGTTGAGGATGGACactgtccttttgttttctataaaacaAAGTATGTATATGCTGGAGAGACAGAATGTGATTAAAAAGGAAACCTTATAGGAAGATGAAGTTTAAGCTATGGATTTCAGGATTTGCCTTGGGATCATCCAAAATGCAGAGACTCATCTCATGATCTCATTTGAGAGCTGCCTTACTATTTTAAATTCCCTTTGGTAAAAGTGGTGACAATCACCTCTGGATCAGTTTTGCAATGTGATCACTACAAAAGCGGGGCAGGGTTATCAGATCTTGCGAGGACTACATTTGGATCCCCAAATGTGGATGAAAGCTCAAAAGAAAGAATGGGACACTGCTGTTTGTTCTGCAAGTACTATTCAAATCCTTTCTTATCCAGGAGCTTAAAAGAAGATAATCAATGTTCACTATGGGATGTCGTTTTCACTTGGAAGGCCCCAGTTTCTGATGTGGGATTGGAAGTAATGGCAAAAGCAAGCGCAGCAGCAGAAACCTGAAGAGAAAAATGAACTCATACCATCACTACATGTTTTGATACTTAAAAGTAATCTGCATAAGACCTGTAGTGGGTCCCCACACCTCCAGATGCAGGCTTCCTAGGATGTCTGTGTTGGCCCAAATTTCATACTCACTGTTTATGTGACTATTTTTGATtggcaaatgaaaaacatggtCTTTAGTGTGGTGAAATCCTTTGAATCAAGCAAGGTTGACGCCTAAAGCCTGAAGCCTAAGAGAGTCGGTGGAAAAAGGTTTCCAGAACATTAGGTGAAACTGCATTGACCACATAGTGGTTATGCTATTACTTTTTTTGCCTCCTGTGTTATGTTCTCATAAGTATGTTTTGACCTTCCCTCCAGTAGGGATAACCGAGTCAGgtactttgtgtattttgtaagaGACgggagaaaaaatataatcaggGTAATATCTGacaaatgtatcattttaaattacaaatgccAAAAAGGAAAGTTTCATTGCACACTGCCAGCCACACCCCCATCCCCCATCTCAATGTCAGTGTCAGTTTTCGATCGGCATTATTGAATGTTCAGTTATTTAAGTTTGTACATTTAAGCATGTTCCTAAAACAGTGTTGGGTTCAGCAAATGTTAAACACTGGCTTACATTGTGGTTGGCTAGGGATATGGGGTCatatctgtatatttatgtattttgtcgAGTACTCTAGTGTATAGGTTTAAACTTCTTTTGCAGTGCCACATGTTGGGAACTACTGGTTTACAAAAAGGGCCAAACTTACAAATCttacaaaatacacacttttctagtgtttctttgaaaacatttgtttgagGTTGTTGTTAATCCTCTGAGATTCATTTGTAGTTCTTTTTAGACATGTTTTAGAGTGAAGTTCAGCTACTAtgtcagaaaaacacaaacaaaatgttcaggGAAGAATTTAAGTAAATATGATGCATTAATTGAAGGCAGTAGCCAGTGCTGctaaatcaaattaatcttCCGGAGGTATTACCATTTGACAGTTAGCAGCTtgaacagtattttttaatcagtaaATGAAGTACCCTAGATGGTGAAGACCTAGCACAAGCATGGCATGACAGAAgagaacatttaataataagCCATGTTATATGTAAAAGTGTGCACACTGCAGTAGTATcatgaacatgtttattttgctcCAAATACCAATTGAATGCTCACTGGCTTAGTTCACAatcacaatgtttaaattacaccaagcaaaattgtgttttatgttttgtatacaaATGAATTAAGAACATGTATTTTGGGATCACCgttttaaaatagttcagtACTATAATGTACACTTTTTGCTCTCTGAAGAGGAAGCCAGTTGAATTATCTAAAAATGACTGGACTGCTTCTAATGATGGATTTGTTTGATTCCTTGTCATGTAactaaaaatgcagttttcccTCTTAAATGCACTTTAGAGTAGAGGTGTTCTTTTACTGTTTGAGGACTTGTTTTATTGGTGCTTTAAACCCTCAGCTGCATGATGTGGGAAAGGTAAATTGAGTTATGTGAGTAATTTGCAACATAAATGAACAGGCTGAAGGTTTGGAAACCAGGAGGCCTCTGAGGCGTGGAATTGTTTATATTCGCTTCTTCTACTTGCatctaaaatgtgttttcccatTTGTCCTGGGTTTTTCTAGGTTATAAAATTAGATACTTTACTTTAACAATGGTATATACTCTGGGCCTTAATGCTACAGTCAAAccttatgtaaataaataaaatacatggtaGTTTAATAATAGCCCCCACCCCAAATAGTTTATTGATGATTGAAGATGACCAATGTGTTTTTACTCATACTATGGTATTATTGTCATCATTGCTGTAAGCCTATCAGTCAGATGTTATTcccaaataataatttgttgcCAGTATAGTAAATAACCGTTTGAGAGAGGCCTACATAATATCAGCAAGAAGGTAACTGGGTAATTTGAAACCATGCTTTgtctaaatgcacacacaagcctgttttcttttaaaatggttGAAATAATTCAAAAGACCTtctaacatttatatatatagtcaaatgaaatcatgtaaattatattaaatgaacACTCTAAAATGGGATTAGATTTGGAAATCGAGCTCACTACCATTAAACATGTAGGGAATTGAAGGGAGGGACATTTAAACACCATAAAGGGACACCGTACAATTTAGTTTTACGTAACCCCTCTGGGCCAGTTTACATGTAGTTTACATGACTGAGGGgtactgaattttttttttgtaaatgtggtATTCTGATTTCAAGGCAAACATACCTTCAGAGACTCTCACTAAATATTCTGAAATTTTGCTAATGtttgttaagaaaatatatgcacattttattatttttttaaatgggaaaaagCACAATTATTTTAGTCTACTTGTATTCtcttactgtatgtatattttgaaaaggttgGTTAAGAgaagatgtatttattcttttataaaaatgtattcttcgGTGAATTGTAATAAGTTGGTAAATgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010330 True 7018 mRNA 0.41 19 24673212 24704825

Neighbor

gene id symbol gene type direction distance location
AMCG00010329 NA coding upstream 30559 24636157 ~ 24642653 (+)
AMCG00010328 NA coding upstream 47914 24614074 ~ 24625298 (+)
AMCG00010325 txnl1 coding upstream 355512 24310361 ~ 24317700 (+)
AMCG00010324 NA coding upstream 421630 24251000 ~ 24251582 (+)
AMCG00010323 onecut2,LOC106572165 coding upstream 443438 24228548 ~ 24229774 (+)
AMCG00010331 NA coding downstream 8822 24713647 ~ 24717375 (+)
AMCG00010332 LOC106511892 coding downstream 99315 24804140 ~ 24818166 (+)
AMCG00010338 NA coding downstream 146962 24851787 ~ 24896459 (+)
AMCG00010344 trabd2a,LOC106513543 coding downstream 740247 25445072 ~ 25445484 (+)
AMCG00010345 rnf170,LOC104928258 coding downstream 875603 25580428 ~ 25590886 (+)
G79846 NA non-coding upstream 22580 24601132 ~ 24650632 (+)
G79829 nars non-coding upstream 371343 24300299 ~ 24301869 (+)
G79827 nars,LOC105905856 non-coding upstream 374997 24295388 ~ 24298215 (+)
G79820 fech non-coding upstream 397528 24271275 ~ 24275684 (+)
G79749 NA non-coding upstream 788405 23842459 ~ 23884807 (+)
G79849 NA non-coding downstream 19009 24723834 ~ 24727757 (+)
G79924 NA non-coding downstream 293469 24998294 ~ 24998497 (+)
G79952 NA non-coding downstream 877493 25582318 ~ 25582575 (+)
G80032 NA non-coding downstream 1422258 26127083 ~ 26127308 (+)
G80138 NA non-coding downstream 1668827 26373652 ~ 26375356 (+)
AMCG00010320 LOC104946060 other upstream 663359 23920760 ~ 24009853 (+)
AMCG00010292 rchy1 other upstream 1343666 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 1969803 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 2294403 22357969 ~ 22378809 (+)
G79382 NA other upstream 2625670 22046118 ~ 22047542 (+)
AMCG00010333 NA other downstream 128246 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 1287733 25992558 ~ 25996414 (+)
G80014 NA other downstream 1307659 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 1675642 26380467 ~ 26403020 (+)
G80249 NA other downstream 2851590 27556415 ~ 27557007 (+)

Expression


Co-expression Network