Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00010345 |
| gene name | rnf170,LOC104928258 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 25580428 ~ 25590886 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| rnf170 | Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Acts upstream of or within chordate embryonic development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Used to study hereditary spastic paraplegia. Human ortholog(s) of this gene implicated in autosomal dominant sensory ataxia 1. Orthologous to human RNF170 (ring finger protein 170). |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K15707 | RNF170; E3 ubiquitin-protein ligase RNF170 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00010345 | True | 1487 | mRNA | 0.47 | 6 | 25580428 | 25590886 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010344 | trabd2a,LOC106513543 | coding | upstream | 134944 | 25445072 ~ 25445484 (+) |
| AMCG00010338 | NA | coding | upstream | 683969 | 24851787 ~ 24896459 (+) |
| AMCG00010332 | LOC106511892 | coding | upstream | 762262 | 24804140 ~ 24818166 (+) |
| AMCG00010331 | NA | coding | upstream | 863053 | 24713647 ~ 24717375 (+) |
| AMCG00010330 | NA | coding | upstream | 875603 | 24673212 ~ 24704825 (+) |
| AMCG00010346 | LOC108439146 | coding | downstream | 190509 | 25781395 ~ 25782444 (+) |
| AMCG00010347 | thap1 | coding | downstream | 238313 | 25829199 ~ 25833535 (+) |
| AMCG00010367 | mob3b,LOC106572798,LOC108414757,LOC107721040 | coding | downstream | 263292 | 25854178 ~ 25879195 (+) |
| AMCG00010360 | NA | coding | downstream | 289729 | 25880615 ~ 25890608 (+) |
| AMCG00010356 | NA | coding | downstream | 338325 | 25929211 ~ 25934598 (+) |
| G79924 | NA | non-coding | upstream | 581931 | 24998294 ~ 24998497 (+) |
| G79849 | NA | non-coding | upstream | 852671 | 24723834 ~ 24727757 (+) |
| G79846 | NA | non-coding | upstream | 929796 | 24601132 ~ 24650632 (+) |
| G79829 | nars | non-coding | upstream | 1278559 | 24300299 ~ 24301869 (+) |
| G79827 | nars,LOC105905856 | non-coding | upstream | 1282213 | 24295388 ~ 24298215 (+) |
| G80032 | NA | non-coding | downstream | 536197 | 26127083 ~ 26127308 (+) |
| G80138 | NA | non-coding | downstream | 782766 | 26373652 ~ 26375356 (+) |
| G80140 | NA | non-coding | downstream | 813720 | 26404606 ~ 26409613 (+) |
| G80163 | NA | non-coding | downstream | 906883 | 26497769 ~ 26502274 (+) |
| G80207 | NA | non-coding | downstream | 1324848 | 26915734 ~ 26916135 (+) |
| AMCG00010333 | NA | other | upstream | 742876 | 24833071 ~ 24837552 (+) |
| AMCG00010320 | LOC104946060 | other | upstream | 1570575 | 23920760 ~ 24009853 (+) |
| AMCG00010292 | rchy1 | other | upstream | 2250882 | 23316015 ~ 23329546 (+) |
| G79475 | dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 | other | upstream | 2877019 | 22699742 ~ 22703409 (+) |
| G79420 | rpl17,LOC107579731 | other | upstream | 3201619 | 22357969 ~ 22378809 (+) |
| AMCG00010366 | tal2,LOC106585373,LOC106580046 | other | downstream | 401672 | 25992558 ~ 25996414 (+) |
| G80014 | NA | other | downstream | 421598 | 26012484 ~ 26026303 (+) |
| AMCG00010369 | snx30,LOC107569385,LOC106591923 | other | downstream | 789581 | 26380467 ~ 26403020 (+) |
| G80249 | NA | other | downstream | 1965529 | 27556415 ~ 27557007 (+) |
| AMCG00010393 | isca1,LOC107662049 | other | downstream | 2278553 | 27869439 ~ 27874931 (+) |
