AMCG00010347 (thap1)


Basic Information

Item Value
gene id AMCG00010347
gene name thap1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25829199 ~ 25833535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010347
aataaataaattaataaataaaaaagggaattaGTTACATGGTCAGCTTCGCCGTGCTTTCGGCTTCCTTCTAAGGCAGCGATGGTTCAGTCGTGTTCCGCGTACGGATGTAAAAACAGATatcacaaagacaaaaacatttctttccACAAATTTCCCCTCGCGCGTCCTGACGTGTGTGGAAAATGGGTAGCGGCGATGAGACGGAACAACTTCAAGCCCACAAAGTACAGCAATATCTGTTCACAGCATTTCACAAAAGACTGCTTCAAGCGAGAGTGCAACAACCGAGTCCTGAAGGAGAATGCAGTGCCCTCACTCTTCTGTTTCAGTAGATTAGAAGAAAAGGATGAGGCCTTGGATGAACAAGACCCACCAGAAATAACTCTCCCCCCAGAGCTGCCCCTCGCTGTCTCgcagcagcagccccccccGTTGCAGCCCGAGCACTCCCAGTTGCAGAACATCGTGCAGATGGTCGTGCACCCCGCCCTGCTCCCCAGCATGTCCATCTCCTGCGACCACAACTACACAGTGGAAGACACGGTGCAGCAGAAGAAAAGGATCCAGCAGCTCGAGGAGCAAGTGGACAAGCTGCGCAAGAAGCTCAAGACGGTGCAGCAGAAATGCAGGCGTCAGGAGAGGCAGCTGGAGAAGATGAAAGCCACACGGGAGTTCCAAAAGGACAAGGGCACGGTGTCCGGGGAGAGCTACGTCATCCTCCCCAAGGAGCTCTACGACGTCCTCAAAGGCATCGAGTCCATGGAAGACTTGTAGAAGCCCTCAGGCCACAAGagacatatttttgtttgcgTTTCCCCACCTCTGTGATTCCCAAGAAGACAGACTAGGGTGGCGAAGTGTGACACAGTGCAGAGAAGCACTATGTGGTACCTCTATGATCATGTACCTTGCCATAGCAGCAGATCACTGCACGGTAGGGAGTTTCACGGCTCCCAAagaggtttgttgtttttttgcggTGCTGCATTCCTGTTGCCAGCGTTATATTGTTTGCACAACAGACGGGGACCCCCCTGCAAGCGGCCTGACTTGGTGTCAGCAGTTGTAAATCAAGCTTTGTTTTCAAAAGGGGTTTCCATTTGAGGGTTCTGTTTTCTAGGAAGCCATTctgattttccttttgttcttaTTATACAATTGCATTCTAATTgtcctttaaaacatttacatatataacattttaatatagacTGCACAAACTGAAATGCTTACATACCAGGCGAGTGAAAATTATATGTTGGGCTTCCAATTCTGACGACCAAAATATGCAGGCGTATAAGTGAGTGGTTTTTCATAAGCCCCAATCTCAACTCTGCCTAGGACTAAGACTAAGATTAGATTGGACCTGCCAGCACCCATGTTCCCTTGCACCCCAaagagattgtttttttgttgctctTTCAAAGGCATATTCTTAACCTACAATTAAAGGGTGTTACACAAGTGGTTTTATTAACATCCGATAGCAGCAGCTTCCCCTTTAACACTGCTTGGTCTTAAACAACGAACTTGCACTAATGTTCCTGTTATTTTTCAAACCCATTCttcttgctttatttatatatgcacacgcacatgcacacatacagttGCTTTATAATGTTTGCTACTTTCtccaaaacaaatcaagaataaGTAATAAGTCTCGTAATATCTCTTGAACTTTCCAGTTATCTGAGCCAATTAAAGAAAGCCATACTTGACACCCAGGGCAAGCATTTTCTCTAAAATGTCatcatatttaatacagttACAGCCTTGTTATCTActgacattatttaattattataataaaaaatatacccTACCTGGTGTTGTCTCTACCTGTccttgatgtgtttttgtttgtttgtttttgtaacattcATTCAGTCAATGCACTTCAAGAGAGCACTTAATCATAcacattgattgtttttgttgtcatggtgttttttttttttaatttttagtgTAAATGgggtgtatgtttgtttgtgatgcttcttattaatacataaatgttaCTGCTTTGCAACATTGAAGGCTTGTGAAACATCAATGGGTGTGGCCTCGATCTTTAGTCTGAGTACTTTAGTTACCCAAACATTGCACAGGGTTAAATAGATCCATACAACAATAATATTGGAAAgtgttatttacattattatgtattttatatgaaatattatGAAGCTCTGTAAAAATTgattatatacttttaatttaaagcaagCTATAATTAAGACTAAAGGgaaatttctttaaataagtaCGAAAACATCATTCTGTTATTGCATACATTGATACAGAGCACGGAAAACAGATATAATGGGCAAAGGATCGTTTATTGTTcctgatattattattgttgttattattgtgtgttattttatgtttatttgtattttgattgaattatacagaaaatattttatttcagaaatttaaagaagaaattattaatttgaatgaatGGTGTATCTGATGCTGAACAATAAATGCATCTTGATGGC

Function

symbol description
thap1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in torsion dystonia 6. Orthologous to human THAP1 (THAP domain containing 1).

NR:

description
THAP domain-containing protein 1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K23203 THAP1_3; THAP domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010347 True 2519 mRNA 0.40 3 25829199 25833535

Neighbor

gene id symbol gene type direction distance location
AMCG00010346 LOC108439146 coding upstream 46755 25781395 ~ 25782444 (+)
AMCG00010345 rnf170,LOC104928258 coding upstream 238313 25580428 ~ 25590886 (+)
AMCG00010344 trabd2a,LOC106513543 coding upstream 383715 25445072 ~ 25445484 (+)
AMCG00010338 NA coding upstream 932740 24851787 ~ 24896459 (+)
AMCG00010332 LOC106511892 coding upstream 1011033 24804140 ~ 24818166 (+)
AMCG00010367 mob3b,LOC106572798,LOC108414757,LOC107721040 coding downstream 20643 25854178 ~ 25879195 (+)
AMCG00010360 NA coding downstream 47080 25880615 ~ 25890608 (+)
AMCG00010356 NA coding downstream 95676 25929211 ~ 25934598 (+)
AMCG00010359 fsd1l,LOC108412563 coding downstream 122219 25955754 ~ 25974860 (+)
AMCG00010358 NA coding downstream 143161 25976696 ~ 25985497 (+)
G79952 NA non-coding upstream 246624 25582318 ~ 25582575 (+)
G79924 NA non-coding upstream 830702 24998294 ~ 24998497 (+)
G79849 NA non-coding upstream 1101442 24723834 ~ 24727757 (+)
G79846 NA non-coding upstream 1178567 24601132 ~ 24650632 (+)
G79829 nars non-coding upstream 1527330 24300299 ~ 24301869 (+)
G80032 NA non-coding downstream 293548 26127083 ~ 26127308 (+)
G80138 NA non-coding downstream 540117 26373652 ~ 26375356 (+)
G80140 NA non-coding downstream 571071 26404606 ~ 26409613 (+)
G80163 NA non-coding downstream 664234 26497769 ~ 26502274 (+)
G80207 NA non-coding downstream 1082199 26915734 ~ 26916135 (+)
AMCG00010333 NA other upstream 991647 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 1819346 23920760 ~ 24009853 (+)
AMCG00010292 rchy1 other upstream 2499653 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 3125790 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 3450390 22357969 ~ 22378809 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 159023 25992558 ~ 25996414 (+)
G80014 NA other downstream 178949 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 546932 26380467 ~ 26403020 (+)
G80249 NA other downstream 1722880 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 2035904 27869439 ~ 27874931 (+)

Expression


Co-expression Network