AMCG00010366 (tal2,LOC106585373,LOC106580046)


Basic Information

Item Value
gene id AMCG00010366
gene name tal2,LOC106585373,LOC106580046
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25992558 ~ 25996414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010366
ATGACCAGGAAGGTATTTACCAACACCCGGGAGAGGTGGAGACAGCAGAATGTCAACAGTGCTTTCGCTGAGCTGCGGAAGCTCATCCCCACTCACCCCCCGGAGAAGAAGCTGAGCAAGAATGAGATCCTGCGGCTGGCTATGAAATACATCAACTTTCTGGTGCAGCTGCTGGACAGCCAGAGCGGGCAGTCGGCCGCCCACTCCCCCAGCTCCCTTCTGCACTTCCTGAGGGGCAATGTGGAGCGCCTGAACTCCGCCAAGCAGTGGGGGCTCATCAGCGACACAGAGGCCCCGTCCCCGGGTTCCAGCTGCGACAGCTCGGAGTCCTGGTAG
>TU99797
TGAGACTGACGTGCTATAAATTGTGAGGGACAAACCCTACTCCCCACAGCCCCCCCTCCGCCTCTCCCCTACAGTTAGCCTGTCAGAGAGCTTGAATGTGATCAGAGAGCATGAGGATCTGTCTCTAATAGGAGCTACGGGGCTGCAGGGAGTAGACTGCCTAATGACCGGACCAAGAACCATCTGTAAAGAAAGAATTTCTGCTCCACTCTTGGCACTTACAGACCTGTACCACCATGACCAGGAAGGTATTTACCAACACCCGGGAGAGGTGGAGACAGCAGAATGTCAACAGTGCTTTCGCTGAGCTGCGGAAGCTCATCCCCACTCACCCCCCGGAGAAGAAGCTGAGCAAGAATGAGATCCTGCGGCTGGCTATGAAATACATCAACTTTCTGGTGCAGCTGCTGGACAGCCAGAGCGGGCAGTCGGCCGCCCACTCCCCCAGCTCCCTTCTGCACTTCCTGAGGGGCAATGTGGAGCGCCTGAACTCCGCCAAGCAGTGGGGGCTCATCAGCGACACAGAGGCCCCGTCCCCGGGTTCCAGCTGCGACAGCTCGGAGTCCTGGTAGCTTTCTCCATGGCctaaagaaacagagaaaaaagaaacaggactGATGTGTGACTGGAAGCCTGGGACCTAAAAGTGGCTGATTTTTCACTGTTGTTTTGTTACAGCGTACTGTGCTTCTGCAACACATCGGACCCATCCAAGCCAGGCGAtggttaatcttttttttttttttggtgtgcatCTTAGGTGATCCTACCGTTTCCAGTTTGGCAACCCTAGCTGGGGTAGCTTAATGTCCGTCGTCTAGCTATAATGTAGGAAAACTGACAAAAGGCCCAGCAGTGGCACCAGGAAAGCCTGATGGGAAACTCTTCATGTTGATGGCGCTGTCACACTAGTTATCTGCATGGATGTTACTTGGGTGTCTTCCcccattatttattgttttcaatgttatcCCTCTGGTTcgggatgtttttttaaaatataaataaataaatatatatatatattaattatttaagatCTTCATCAGAACTACCCTTTGATAAATATATTCGTTTAAACTTTTTATCTAACTGACAGCATAACAATTTACCACATCTAAAGGCATATTATGATGGCTTGTTCACAATGAAAGCACTTGTGCTGACATCTCATGCAGAATTCCTAAAATGGAAATattcaaacacagaaacactgaaGCATCCAAACATTGGAGTCAGGCAAGGGTATTAAGTCATACTTGGGGACAGAAATGATCCGTGTCGCCATTGTGACattccaaattaataataaaaggccATGTTGTTTATTGATATCATATTCTGTACTAACGTAATGATGAAAACCTGTTGTGTTCTATAATGTTATAATCATTTCTATATCACTGTGTTTTCAAAAGGTTTATAGTATAATTGTGTGGGTGCCTGTGGACAGTACAGCCAGTGGAAATGGCAATTCTAAAAATGATATGCTTCTGGACAAGGAAGGTCAAAGATTGTTTAATAGATGGCATTCTTGGAAGAAATTACAGCAAATTGGGGGGAGAGACAAAAAAATTGCAGAGACGTTTTGCTtactgaaaaactaaattaatttgcCGTTTTGTATGACAAAATACATCACCTTAGCCAAAGAATATTATTTGACCAATCCGTCACAGGGGCGTTGTGACACCGTGTATGACAATGcccttgcttttgttttctctaaagcgttttttctttgtggtaatttattatttattgtgatttatttatttatgtatttatttaatctgtaatgtGGTTAATAAAAGTATGTTGTGACAATGC

Function

symbol description
tal2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and ventral spinal cord interneuron differentiation. Is expressed in floor plate; neurons; and spinal cord. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia and adult T-cell leukemia. Orthologous to human TAL2 (TAL bHLH transcription factor 2).

NR:

description
PREDICTED: T-cell acute lymphocytic leukemia protein 2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010366 False 336 mRNA 0.60 1 25994821 25995156
TU99797 True 1830 TUCP 0.43 2 25992558 25996414

Neighbor

gene id symbol gene type direction distance location
AMCG00010358 NA coding upstream 7061 25976696 ~ 25985497 (+)
AMCG00010359 fsd1l,LOC108412563 coding upstream 17698 25955754 ~ 25974860 (+)
AMCG00010356 NA coding upstream 57960 25929211 ~ 25934598 (+)
AMCG00010360 NA coding upstream 101950 25880615 ~ 25890608 (+)
AMCG00010367 mob3b,LOC106572798,LOC108414757,LOC107721040 coding upstream 113363 25854178 ~ 25879195 (+)
AMCG00010365 NA coding downstream 7521 26003935 ~ 26012974 (+)
AMCG00010362 ythdc1,LOC107693408 coding downstream 45927 26042341 ~ 26057105 (+)
AMCG00010355 dnajc25,LOC107575448,LOC107682878 coding downstream 62734 26059148 ~ 26062893 (+)
AMCG00010354 NA coding downstream 72768 26069182 ~ 26080484 (+)
AMCG00010361 ugcg,LOC107571241,LOC107685163,LOC107558686 coding downstream 150311 26146725 ~ 26161931 (+)
G79952 NA non-coding upstream 409983 25582318 ~ 25582575 (+)
G79924 NA non-coding upstream 994061 24998294 ~ 24998497 (+)
G79849 NA non-coding upstream 1264801 24723834 ~ 24727757 (+)
G79846 NA non-coding upstream 1341926 24601132 ~ 24650632 (+)
G79829 nars non-coding upstream 1690689 24300299 ~ 24301869 (+)
G80032 NA non-coding downstream 130669 26127083 ~ 26127308 (+)
G80138 NA non-coding downstream 377238 26373652 ~ 26375356 (+)
G80140 NA non-coding downstream 408192 26404606 ~ 26409613 (+)
G80163 NA non-coding downstream 501355 26497769 ~ 26502274 (+)
G80207 NA non-coding downstream 919320 26915734 ~ 26916135 (+)
AMCG00010333 NA other upstream 1155006 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 1982705 23920760 ~ 24009853 (+)
AMCG00010292 rchy1 other upstream 2663012 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 3289149 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 3613749 22357969 ~ 22378809 (+)
G80014 NA other downstream 16070 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 384053 26380467 ~ 26403020 (+)
G80249 NA other downstream 1560001 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 1873025 27869439 ~ 27874931 (+)
G80326 NA other downstream 1910083 27906497 ~ 27906829 (+)

Expression


Co-expression Network