AMCG00010372


Basic Information

Item Value
gene id AMCG00010372
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26622349 ~ 26638228 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010372
ATGCAAATGAACGATTTGTCGACCTTCAATTGTCAAGCGGGGAAAGGGGATGGtgactgggggttGGAGTCCAATGAACTAAGGCGGTACTGCAGTGCTTTTGGGTATGGCTGGGACTATCCTGACTCTACTTTTAGAGACATCCCATTCTGTTACCCGGAGTTTCTCTTCCTCCGCTTGCTGACAATGATTGTGTGTGCTGAGAGCTTCAGGTTAAGCCCTCTGGGACTTGTCCGTGTGCGTCAAACGATGATAACATTCCAGCCAATAGATGAACTGAAGAAAGGTCCCTTTTCCCTTCAGGCATCTGTGAGAGAATACAGAGCTGTGGACTTGGGAATAGAAGTGGACATTGGCCTTGCTGTAGCAGATAGATCCAACAAGcctgtgtgggaagagcttGTGACATTACTCTCCAGAgatatgaagaaaataacaagcaaaCGGCAACATGCCCAAGGGAGCACTGACCCAAACGAAGTGAAATCAGTGGAAGTTGTCatcccatggaacacaggactgaaaTATGCTCAAGCTACTAGGGACTATAATCCACTTCATCTCTTCCCAGCCACTGCTAAACTCCTTGGATGCAAACGAACCATAGCTTATCCCTTGTGGACGGTATCCAAATGCCTTGCTGAAATAGAGAAACATGAAGgaACTGATGCTGTCAGAGCCCCTGCCAGTGTGCGAGTGGAGTTTCACCAACCGTTGTTCATGCCTGGGAAAGCTGTCATCAAGTTCTGGGAAAATGCCCCTGAGGGAAGCACTTCATCTCACAAACTCTACCACTTCAGAATGGGAGAGAGTGAGGACAGCACCCCTCATCTTGTGGGTGAAATATGTGTAGGGGAACAGTAGCTTAGAGGACAATtgcatgaaatactgaaatggaTTAAAGACATATGTAGAGGCAATGTATCTAAGACATGAAACACCTATTTTCATGACATCAAGCACCTTAATGTGTAATCAATGACTTCAAGTTGGCAAACTTGCCTAACATGACAACTGGGAATGGacttttatatgtgtgtgtattttaattgtaatagttttaatttacaagAGAAGTTCTGTATGTTTTTGGGTATATTTTTGCTTCTTTTCAGTGATTAGAAAGATTAGAAACTGCTGTTGGAATAACGGCTAAGAGAAATTACTGTTATTTGTCTTCCCACTAGCTAATCTTGTTGTTTGATTCTTAAGCCTCTTCTATAGCAACAAATCGTGTTGGTACTGAAACCAATCTATTTATCCATTTTctttgaacaaaaatataaaaagtgtgGCCTGGTGGTGTAGTtattagtgctgctgcctcacagctcctgggagCCAGGTTTGATTCCAGCCTTGAGTGCCTGCCAGTGTAGAGTTTGCATATTTTCCACGTGCGTTTTTGCCGGGTTCTCTATGGTTTCTTCCCACTTCCAAAACATATGttgcttaggttgattggctactccAAACTGCCCTGTCATCATGTGATTGTTTGTGGGGGGTGTTGCTTCCCTGGGCTGGACTGGCCATGCGCTCTGTTAGGGTCTGGCTCACTGTGACCTTGTAGTTGATGAAGTGGGTATTGAAAATGGAGGGATGGTTGGTAGAGTATCAAAATGTAGTATCAAATGAAGAACTGGTTAAAACCACTGAGCAAACCTAGGAGAGAAGAAAGATAGTGCTTTTGAAAAAAACTTTCCAAAAAGCAGTTCCCAAACTAGGACTGTGCCAGCATACCACATTTGAATCGATGGCCCCTCTGCTTCAGAATTGTTGTGCTTTTAATGACTTTCCcggcttttaaaacatttcaatttcagttttaatctctttctttctcaaaaAGAGCAGTGTTCTGATCCCTTGCAgaatattttagtaatttaaggTGAATGACTTGGGAATTCTAGCTAGTTTATTTTACTGACAACATCTGAGTGCTCTGCCCAGATTTCTCATCTCGGAGTACAATTAATTTTACCTATCCTTCAGCTTAGTTCACCAGTTTATTTCAAACCTAAAATGACTGCTTTAAATTAACAGACTGGAAAGGAAAATTAAAggatggattaaatcaaaactctcTCACCCACTTATAGCAAATTACAAAGTGGAAAACTGATATGTTCCATACATTTGAACACAAAATACTCCTGTTGAAACTACAATGTGCAGATGGATATGGCAGTGTAGTAaaggtcaaaataaaatactttcatttaacatagacaaatacaaaacatccaTAAAAGAATTTTAGCGATTCCAATTCCGATTTCGATTCTTATGGATTCCCAGTTTCGATTCCaatgtagtaaaaaaaaaaatgaagtacaaCGTTTTGatatcaaacacatttattctgtgtcttattttacaaaacatttagttGCAGCTGAATACCatgaacaaaaatcagcaggctACATACAAACTAAGGACTCCTTTAAGAGCTATATGTGtacaaaactgttaaattaacactttaacaattaacaattgacaattcgaactacctacaagtGCCAAAACCGGTCTTTGTAACCGATAGCTGTTTAACAGTtgtgatatgataatcaaaggcaaactaTGGCATAAAACtcatatgttttattcatgaacatcaaatccaacatttgtATAGCACAAatggattatttaaatatgattattgatatatgatcataaaacataaatattattgctatgaataacaaagcacttttttttctaaacgtgcacactgcagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010372 True 2757 mRNA 0.39 5 26622349 26638228

Neighbor

gene id symbol gene type direction distance location
AMCG00010368 NA coding upstream 257288 26363239 ~ 26365061 (+)
AMCG00010353 kiaa1958,LOC107558658,LOC107685162 coding upstream 273019 26341343 ~ 26349330 (+)
AMCG00010357 hsdl2,LOC107558657,LOC101073112 coding upstream 293681 26306640 ~ 26328668 (+)
AMCG00010361 ugcg,LOC107571241,LOC107685163,LOC107558686 coding upstream 460418 26146725 ~ 26161931 (+)
AMCG00010354 NA coding upstream 541865 26069182 ~ 26080484 (+)
AMCG00010377 NA coding downstream 97069 26735297 ~ 26735518 (+)
AMCG00010374 plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956 coding downstream 109340 26747568 ~ 26751936 (+)
AMCG00010378 NA coding downstream 279669 26917897 ~ 26921875 (+)
AMCG00010380 NA coding downstream 626557 27264785 ~ 27277753 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding downstream 822814 27461042 ~ 27466622 (+)
G80163 NA non-coding upstream 120075 26497769 ~ 26502274 (+)
G80140 NA non-coding upstream 212736 26404606 ~ 26409613 (+)
G80138 NA non-coding upstream 246993 26373652 ~ 26375356 (+)
G80032 NA non-coding upstream 495041 26127083 ~ 26127308 (+)
G79952 NA non-coding upstream 1039774 25582318 ~ 25582575 (+)
G80207 NA non-coding downstream 277506 26915734 ~ 26916135 (+)
G80208 NA non-coding downstream 278313 26916541 ~ 26916839 (+)
G80210 NA non-coding downstream 440061 27078289 ~ 27078504 (+)
G80217 NA non-coding downstream 564773 27203001 ~ 27203201 (+)
G80235 NA non-coding downstream 650351 27288579 ~ 27288856 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 219329 26380467 ~ 26403020 (+)
G80014 NA other upstream 596046 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 625935 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 1784797 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 2612496 23920760 ~ 24009853 (+)
G80249 NA other downstream 918187 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 1231211 27869439 ~ 27874931 (+)
G80326 NA other downstream 1268269 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 1604761 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 2856335 29494563 ~ 29503523 (+)

Expression


Co-expression Network