AMCG00010374 (plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956)


Basic Information

Item Value
gene id AMCG00010374
gene name plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26747568 ~ 26751936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010374
ctGTTACTCACAATTTTGTATCAATCATGAACAGTTTTGGCAATATTTTTACTGGAGAGATCTCCATGTATTTCATAAAGTCTACAAGGGAAGCTCTTATTGCTCAGGAGAAGACTATTGTGACTGGCGAGTGCTGCTACTTGAATCCTCTAATTCGTAGAATCATACGATTCATAGggGTATTTGCTTTTGGGCTGTTTGCTACAGACATCTTTGTGAATGCTGGTCAAGTTGTAACGGGAAATCTGGCACCGTACTTTTTAACTGTGTGCAAACCAAACTACACTCGGACGGAATGTCGCTTCAACCACCAATTCATCACTAATGGAAACATCTGCACAGGAGACCAGATGATAATTGAAAGAGCTAGGAGATCCTTCCCATCCAAAGATGCTGCTTTAAGTGTTTACTCTGCTGTATATGTGACAATGTACATCACAAgcactataaaaacaaaaagcagcagacTCGCTAAACCAGTTCTCTGTCTCGGGACCCTCTGTGCTGCATTCCTCACCGGGCTCAACAGGGTGTCTGAATACCGGAATCACTGTTCAGATGTAATTGCTGGATTCATTTTAGGAAATTCAGTGGCATTATTCTTGGGAATCTGTGTTGTTCACAACTTCAAGGGAGTACATGGAACACCTACGAAGCAGAAAACTGAGGATTACCGCGGACTTCCTCTGATGACATTTCCACGAGTTGAGAGTCCCCTGGAAACCCTG

Function

symbol description
plppr1 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to act upstream of or within nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system; neural tube; and somite. Orthologous to human PLPPR1 (phospholipid phosphatase related 1).

NR:

description
PREDICTED: phospholipid phosphatase-related protein type 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010374 True 728 mRNA 0.43 5 26747568 26751936

Neighbor

gene id symbol gene type direction distance location
AMCG00010377 NA coding upstream 12050 26735297 ~ 26735518 (+)
AMCG00010372 NA coding upstream 109340 26622349 ~ 26638228 (+)
AMCG00010368 NA coding upstream 382507 26363239 ~ 26365061 (+)
AMCG00010353 kiaa1958,LOC107558658,LOC107685162 coding upstream 398238 26341343 ~ 26349330 (+)
AMCG00010357 hsdl2,LOC107558657,LOC101073112 coding upstream 418900 26306640 ~ 26328668 (+)
AMCG00010378 NA coding downstream 165961 26917897 ~ 26921875 (+)
AMCG00010380 NA coding downstream 512849 27264785 ~ 27277753 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding downstream 709106 27461042 ~ 27466622 (+)
AMCG00010381 NA coding downstream 756919 27508855 ~ 27509833 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding downstream 773584 27525520 ~ 27548008 (+)
G80163 NA non-coding upstream 245294 26497769 ~ 26502274 (+)
G80140 NA non-coding upstream 337955 26404606 ~ 26409613 (+)
G80138 NA non-coding upstream 372212 26373652 ~ 26375356 (+)
G80032 NA non-coding upstream 620260 26127083 ~ 26127308 (+)
G79952 NA non-coding upstream 1164993 25582318 ~ 25582575 (+)
G80207 NA non-coding downstream 163798 26915734 ~ 26916135 (+)
G80208 NA non-coding downstream 164605 26916541 ~ 26916839 (+)
G80210 NA non-coding downstream 326353 27078289 ~ 27078504 (+)
G80217 NA non-coding downstream 451065 27203001 ~ 27203201 (+)
G80235 NA non-coding downstream 536643 27288579 ~ 27288856 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 344548 26380467 ~ 26403020 (+)
G80014 NA other upstream 721265 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 751154 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 1910016 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 2737715 23920760 ~ 24009853 (+)
G80249 NA other downstream 804479 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 1117503 27869439 ~ 27874931 (+)
G80326 NA other downstream 1154561 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 1491053 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 2742627 29494563 ~ 29503523 (+)

Expression


Co-expression Network