AMCG00010379 (epha5,LOC108428864,LOC107567057,LOC107702602)


Basic Information

Item Value
gene id AMCG00010379
gene name epha5,LOC108428864,LOC107567057,LOC107702602
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27525520 ~ 27548008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010379
cCTTCACCTATCAGCTTtgtaaagaaaggaaaaacagcaaAGAACAGCATCTCTGTGTCATGGCAGGAACCAGACCGCCCCAATGGCATCATTTTGGAATATGAgatcaaatattttgaaaagGATCAGGAGACAAGCTACACCATCATCAAGTCAAAGGAGACCGAGATCACGGCGGATGGTCTGAAGCCTGCCTCAGTGTATGTGTTTCAAATCCGAGCTCGGACCGCAGCCGGGTATGGAGATTTCAGTCGCAGGTTCGAGTTTGAAACCAGCCCCTATTTAGTAGCTGCATCCAGTGACCAGAGCCAGGTTCCAATCATAGCTGTCTCCATCACAGTGGGGGTGATCCTGCTGGCTGTGGTTACAGGATTCCTCCTCAGTGGAagACGGTGTGGCTATAGCAAGGCCAAGCAGGATCCCGAAGAAGAGAAGATGCATTTTCACAATGGGCATATAAAACTGCCTGGCATACGGACATACATTGACCCTCATACCTATGAAGATCCAAACCAAGCTGTTCACGAGTTTGCAAAGGAGATAGATGCGTCTTGCATTACAATTGAAAGAGTAATAGGAGCAGGTAAACCTGTGATGATAGTAACTGAATACATGGAAAATGGATCccttgatacatttttaaagGTGATCAAAGCTGTGGAAGAAGGTTATCGTTTGCCAGGGCCCATGGACTGCCCTGCCGCTCTGTACCAGCTGATGATGGATTGCTGGCAGAAAGACAGGAACAGCAGGCCTAAGTTTGAAGAAATAGTCAGCCTGTTGGACAAACTCATCCGCAATCCCAGCAGTTTGAAAAccttaataaatgcgtccaatAGGGTGTCAAACCTATTAGTGGAGCATGGTACTATGGAAACCAGTGTCTACCGATCAGTGGGAGAGTGGTTAGAGGCCATAAAAATGGGTCGATACACAGAACTTTTCATAGAAAGTGGATACACTTCAGTGGAAGCAGTGGCTCAGATGACCTTGGATGATCTGAGGAGGGTTGGCGTTAACCTTGCTGGTCATCAGAAAAAGATTATCAACAGCATTCAGGAAATGAGAGTCCAGATGATGAATGGCACAGTACCAGTT

Function

symbol description
epha5 Predicted to enable GPI-linked ephrin receptor activity; growth factor binding activity; and transmembrane-ephrin receptor activity. Involved in neuron development. Located in several cellular components, including external side of plasma membrane; neuronal cell body; and rough endoplasmic reticulum.

NR:

description
PREDICTED: ephrin type-A receptor 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010379 True 1098 mRNA 0.46 9 27525520 27548008

Neighbor

gene id symbol gene type direction distance location
AMCG00010381 NA coding upstream 15687 27508855 ~ 27509833 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding upstream 58898 27461042 ~ 27466622 (+)
AMCG00010380 NA coding upstream 247767 27264785 ~ 27277753 (+)
AMCG00010378 NA coding upstream 603645 26917897 ~ 26921875 (+)
AMCG00010374 plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956 coding upstream 773584 26747568 ~ 26751936 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding downstream 162605 27710613 ~ 27723371 (+)
AMCG00010383 NA coding downstream 215572 27763580 ~ 27775353 (+)
AMCG00010390 NA coding downstream 238429 27786437 ~ 27795327 (+)
AMCG00010384 NA coding downstream 262400 27810408 ~ 27813573 (+)
AMCG00010395 NA coding downstream 303554 27851562 ~ 27867176 (+)
G80235 NA non-coding upstream 236664 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 322319 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 447016 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 608681 26916541 ~ 26916839 (+)
G80207 NA non-coding upstream 609385 26915734 ~ 26916135 (+)
G80264 NA non-coding downstream 247502 27795510 ~ 27796290 (+)
G80331 naa35 non-coding downstream 388158 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 473466 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 658313 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 1176999 28725007 ~ 28725281 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1122500 26380467 ~ 26403020 (+)
G80014 NA other upstream 1499217 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1529106 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2687968 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 3515667 23920760 ~ 24009853 (+)
G80249 NA other downstream 8407 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 321431 27869439 ~ 27874931 (+)
G80326 NA other downstream 358489 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 694981 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1946555 29494563 ~ 29503523 (+)

Expression


Co-expression Network