AMCG00010380


Basic Information

Item Value
gene id AMCG00010380
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27264785 ~ 27277753 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010380
aacagatTTACAGTTGAACGACACTTTAATGGGATACAACATGGGCTGAACACGGATCGCTAAGAGTATAATAACCTCCGAGGACATCAGCACGGCTTTATTTGTCGGACTCGAGTGACTTACTAAACAGGAAGTAAATACTAAGACAAAAACAGCGGGCAAAACAAAGCCGTGTCAACATGGACAACAGACTCCCTCGCCTGGCCAGGGCACCTGCAAAGCTGCGGTACTTCACAAAAACTGATGGAAGTGCAAAACTCATTCCAAAGCCAGGAAGTGATATCATGAATGCTCTAGAGGACTTTTTTGATGAATCAGGAGCAAGTGATGGTAGTGTGCGAGGTTCTCCCATTCTTTTTGAGAATGAGGTGGTTACTCCTGAAAACAGTCCAACAAAAGTTGAATCAGCAGAGACTGTTTTATCTGCTGTGAAGCTACCAGTTGTAAAAAATGTTGTGACAAGtgtcaCTGAAAAAGAAACTCTGGCAAAAGATCCTCAGCAAGATGAAATGGACGAGGAATTCATGGTTGTGGAAGAGGAACATTTTAACTGGCGCACTTGGATTTCCATTCCAAAAAAGAAGCAAGAGACTTCAAATAAGCAACCCAAGCAGGATGAGAATGAGAAGGTCGAGAAGCCATCTGCAAATGTGGCTGCACCTTCAAAGACCAGTGTAACTTGGACAAAAGATGATCAGAACAGTTTAGATGCTGCTCCTGCtcgaaagaaaaagcaaccgaGACATAAACCAGAAAGCCAGAAAGAGCAGGCAAACAAGAGTCATTCCAACAAACGAGATGAAGCTAGGTCTGCTGGTGACAGTAAAGACTTTGAGAAGCAGGGAAAGATAAAAACAGCATCCAGAGCAAAGGATGCAGTGTCTCCTCACAGAGCGGTCCCCACTGATGCCTGTGGTGTAAAGGTACTGACTGTACCCAGAGTTTGTCCTGTGAGTGCAAGACACCTCTCTGGTGCTGGGCTGGATGATTCTGCAGAGGTGCAGATACCTGTTCCAAGTGATCTAGCAGCAGACTGGAATAAAGCACAGCCATCTGGCAATACCCAttacCAAGGTTATGAAAGTGGACCATCTTCAATAAGAACCATTACCTATGAAGATGATGGGCATTTTGACAATGACCAAGAGAACACCATATTAGGCGTCCCTTCATCGGGAAGAAAGTCCCGTCTTCAAGCCTCAAAGAATCCACAAAAGGAAGCCTGCCTAAATAAGgttttcaATATTCTGAATGGCTACGTCAATGTAAAAGTTGGCTTTGAAGAGCAGGATCTTTCCTCAGGAGATATTTTTTATGTCCCATCTGGGCAGATGTACAGTGTATGTAATCTGACTGAGGAACCAGCACTGTTTTTGTATACACAGCTACTATATTCCAACAACTGAGATCGTccatagaagaaaaataaatatgcaaagtTGAAAGCTTGCAAAAGTCATCAACAAATACCAGACATAAGTACACTGGTCAAGCCTATAGTTCACCATTCCCAATCTTGAGAAGTGTATTGCGGAGGTTTTGCCGTTAATGAAAAAGAGCAATTGTAAATATGATGCATAATATTGTTTCTGcttagtttaaataaaaggtAATATTAGACTTTTGTATGATATCTAAAATGTTtgcttgacctttttttttagAGTTTTCAGAGCAGAGAATCATAGTTTAAGGCTATCcatatttgtgaaaatgttttttcaaaaaaaaaaaaaagtgaatgtaaacAAATCTTTTACTTGTTTTTGCATTAAAGTTAAAAGTTCTTATTCAATTTGGTAATTCAGCCTTTTACAGATTATAACCACAAAAGGGCACTGACCTCTTTTCTTGGAGATTAGGG

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010380 True 1864 mRNA 0.41 10 27264785 27277753

Neighbor

gene id symbol gene type direction distance location
AMCG00010378 NA coding upstream 342910 26917897 ~ 26921875 (+)
AMCG00010374 plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956 coding upstream 512849 26747568 ~ 26751936 (+)
AMCG00010377 NA coding upstream 529267 26735297 ~ 26735518 (+)
AMCG00010372 NA coding upstream 626557 26622349 ~ 26638228 (+)
AMCG00010368 NA coding upstream 899724 26363239 ~ 26365061 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding downstream 183289 27461042 ~ 27466622 (+)
AMCG00010381 NA coding downstream 231102 27508855 ~ 27509833 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding downstream 247767 27525520 ~ 27548008 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding downstream 432860 27710613 ~ 27723371 (+)
AMCG00010383 NA coding downstream 485827 27763580 ~ 27775353 (+)
G80217 NA non-coding upstream 61584 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 186281 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 347946 26916541 ~ 26916839 (+)
G80207 NA non-coding upstream 348650 26915734 ~ 26916135 (+)
G80163 NA non-coding upstream 762511 26497769 ~ 26502274 (+)
G80235 NA non-coding downstream 10826 27288579 ~ 27288856 (+)
G80264 NA non-coding downstream 517757 27795510 ~ 27796290 (+)
G80331 naa35 non-coding downstream 658413 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 743721 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 928568 28206321 ~ 28207268 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 861765 26380467 ~ 26403020 (+)
G80014 NA other upstream 1238482 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1268371 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2427233 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 3254932 23920760 ~ 24009853 (+)
G80249 NA other downstream 278662 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 591686 27869439 ~ 27874931 (+)
G80326 NA other downstream 628744 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 965236 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 2216810 29494563 ~ 29503523 (+)

Expression


Co-expression Network