AMCG00010382 (epha5,LOC108428864,LOC107709147,LOC107702602)


Basic Information

Item Value
gene id AMCG00010382
gene name epha5,LOC108428864,LOC107709147,LOC107702602
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27461042 ~ 27466622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010382
ATGGCTCCTTTTCCTTACCTCTTTGAACAGTGGGAAGAGATAGGAGAAGTAGATGAAAACTACGCACCAATCCATACATACCAAGTGTGCAAGGTCATGGAACACAACCAGAACAACTGGCTACAAACAAACTGGATCCTCAATGAAGGTGCCCAGAGGGTTTTTGTTGAGCTCAAGTTCACACTGCGGGACTGTAACAGCCTGCCAGGGGGCCTGGGAACCTGCAAGGAGACCTTTAACATGTACTACTTTGAATCGGATGATGAAGAGGGCAGGAATGTCCGTGAGAGTCAGTACACCAAGATTGACACCATCGCAGCGGATGAGAGCTTCACAGAGCTTGACCTGGGAGATAGGGTGATGAAGCTGAACACTGAGGTGAGAGATGTAGGCCCTCTGTCTAAGAAAGGCTTTTATTTGGCCTTCCAGGACGTAGGCGCCTGCATTGCTCTGGTGTCTGTGCGTGTCTATTACAAAAAGTGCCCCTCTGTGATCAAAAACCTGTCCCTCTTCCCGGACACCATCACTGGGGCTGACTCTTCCCAACTGCTGGAGGTTGCAGGAACCTGTGTCAACAATTCTGTGGCTGAAGAGCTTCCCAGGATGCATTGCAGTGCTGAGGGGGAATGGCTGGTACCCATCGGAAAGTGCATGTGTCAACCAGGGTACGAAGAGATAAATGGCACCTGTCAAGACCGAACAAGCCTCCTTTTGAAATCCAGCGAAGCGTAA

Function

symbol description
epha5 Predicted to enable GPI-linked ephrin receptor activity; growth factor binding activity; and transmembrane-ephrin receptor activity. Involved in neuron development. Located in several cellular components, including external side of plasma membrane; neuronal cell body; and rough endoplasmic reticulum.

NR:

description
PREDICTED: ephrin type-A receptor 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010382 True 732 mRNA 0.50 2 27461042 27466622

Neighbor

gene id symbol gene type direction distance location
AMCG00010380 NA coding upstream 183289 27264785 ~ 27277753 (+)
AMCG00010378 NA coding upstream 539167 26917897 ~ 26921875 (+)
AMCG00010374 plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956 coding upstream 709106 26747568 ~ 26751936 (+)
AMCG00010377 NA coding upstream 725524 26735297 ~ 26735518 (+)
AMCG00010372 NA coding upstream 822814 26622349 ~ 26638228 (+)
AMCG00010381 NA coding downstream 42233 27508855 ~ 27509833 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding downstream 58898 27525520 ~ 27548008 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding downstream 243991 27710613 ~ 27723371 (+)
AMCG00010383 NA coding downstream 296958 27763580 ~ 27775353 (+)
AMCG00010390 NA coding downstream 319815 27786437 ~ 27795327 (+)
G80235 NA non-coding upstream 172186 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 257841 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 382538 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 544203 26916541 ~ 26916839 (+)
G80207 NA non-coding upstream 544907 26915734 ~ 26916135 (+)
G80264 NA non-coding downstream 328888 27795510 ~ 27796290 (+)
G80331 naa35 non-coding downstream 469544 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 554852 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 739699 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 1258385 28725007 ~ 28725281 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1058022 26380467 ~ 26403020 (+)
G80014 NA other upstream 1434739 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1464628 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2623490 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 3451189 23920760 ~ 24009853 (+)
G80249 NA other downstream 89793 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 402817 27869439 ~ 27874931 (+)
G80326 NA other downstream 439875 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 776367 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 2027941 29494563 ~ 29503523 (+)

Expression


Co-expression Network