AMCG00010384


Basic Information

Item Value
gene id AMCG00010384
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27810408 ~ 27813573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010384
CAGCTCTGCCCTTCTTGCCTCTCCACCCCTGCATTTGCAGCTGCTGCCGTCTCCCCCACCAAGATGGAGCCCCTTTCCGCATATCCTCTGAAATGCTCGGTGCCAAAAGCAAGAATGTTCATGGTTTTGCTCACAATGACGATATGCACGGCGGGGTTATTTCTAATGCAGAACAAACTTTTCAAAAAGAAGAAGGTTATAGATTTTTACTCTTTGCAAGTCCGGGATATGAAAGGGAGAACCGTTTCCTTGGAGAAGTATAGAGGGAAAGCGTCTCTGGTTGTAAACGTGGCGAGTCAGTGCGAGCACACGGAGCGCAACTACAGAGCCCTGCAGGAGATGCAGCGGGAGCTGGGCACCTCTCACTTCAACGTGCTGGCCTTCCCCTGCAGTCAGTACGGGCACAGCGAGCCGGGCACAGACCGCGACATCGAGTCCTTTGCCAAATCAAACTATGGCACCACTTTCCCCATTTTCAGCAAGATTAAGATCATAGGCTCAGAGGCCGACCCTGCTTTCAAGTTCATTACAGATTCGATCAAAAAGATCCCGAAATGGAACTTTTGGAAGTTTCTCGTTAACCCCGAGGGACAGGTGGTGAAGTACTGGAAGCCCGAAGAGCCCATGGAAGACATTAAACAAGAGGCGGCCGCTTTAGTGAGGGAGATCATCTTAAAGAAAAGGGCAGAGCTTTAACAGCTTACCCTTGACCTCAATCGATGAACAACTTGTGCCTTTTTCACTGCGTCACACAAGATCTTGTGCCTTAATTTGCTCACCAAACAgagttatattttttacaggagttgcatttttcacatttccgCTCAtggcattgtttttctttggagtATTAACCACAGCCACATGCATAGATAACCTCAAACAATTCAATGTATACCTGTTTAGCAGGTGCTCACTGCTTGACATTTTGATCAGCTTTTTATCTCTTTTGTTGTCATGCATGCAAAGTGAGGGATTATGTGTCCTAGACTATCCCATTGAATTATCACTAGTTTAAACTCCTCTTTTGCATTGAATTTCAGAGTCatccaaaaatacatttctgcatgaTGCACTACAGTCTTGAAGAACAACCTTGACAAGGCCTTGGACTGTTAATCATTACATTATCGACAGGACAGAGATAAATATCTTATTTATCTTATGCTAAAAGAAGTCAGGGGTCTTGTTTAGTCCATACTGGCTTAAGGACCATGTCTCTGCAGAAACTGAAAAGGAGTGTGACCTTTTGACCTTTTGGTGTTTGTGGGGATACACCATTAAGTTGATTATAACTACTAATTGTTTGTGGTTGTTGTATCgttatattgtacatttgcaGTTGTAAAATTGGAGGCATGTTTTTTTCAGGTCAGACTTTATAaaagttgtttgtgtgttgtagGTGGGTGGTTGAAACCTAAGGTACAGATAAAAGTGTTTCATTTATAGATGTTTGTAACCTTGCATTACATAATTTGATACACATGAAAATTATTTGATACCATtggtaatttgcaatttgttcctaaacattttcactcatcaataacataaatattgtGTCTGATGGATACAGGTTAAATGAGTTATGGCATCACATGTCTAAAGTTTGTAAAGATATGGTTCAGTCTAATCTTTGCCAAAACTCTGTAGTGTTATTGCATAAATATACCTGATGCTGGCTTTATTTGTAGTGAAGATACTGTGACATTCAATGACATATAAGTACTGATAAGCAggtgtaatttaattgtaataccTACTACTTTTAATAACCAGAAAGGGTTTATCCCCAGATAGAGTTGCTACATTTAATCCATAAGGAAATGGTTACTTTTCATATTAGGCCTAGactgaatcaaaactttgacctgccaATTAACTGCAAATGACAAATTTGTCACTATAAAGATGCCACTTTATacttctaataaataataaatggataGTGTCTGAGtttgtaacatttaatttgtaggTCGgtcaaaaatgtgattttatgcAGGCGTAAAGAAAGGATCATGCTggatttttttacattacactaCAATTATCAAGAGTGCTTTAGTATTACATTCcacttcaagaaaaacaaaggtgacatatatcttatttttatatcagTTATGAAAGTTGAAATTGTGATATAAAGTGTATTGTGTAAATTAGAACTGTATGTGACCTTTTTTGTACTCTGTTAATATACAAAAGAcccagtatatttttaaagtttcagtTTATAAGTAAATGTCag

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010384 True 2260 mRNA 0.38 3 27810408 27813573

Neighbor

gene id symbol gene type direction distance location
AMCG00010390 NA coding upstream 15081 27786437 ~ 27795327 (+)
AMCG00010383 NA coding upstream 35055 27763580 ~ 27775353 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding upstream 87037 27710613 ~ 27723371 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding upstream 262400 27525520 ~ 27548008 (+)
AMCG00010381 NA coding upstream 300575 27508855 ~ 27509833 (+)
AMCG00010395 NA coding downstream 37989 27851562 ~ 27867176 (+)
AMCG00010396 NA coding downstream 79037 27892610 ~ 27898498 (+)
AMCG00010392 NA coding downstream 106005 27919578 ~ 27933573 (+)
AMCG00010394 NA coding downstream 145134 27958707 ~ 28013490 (+)
AMCG00010402 NA coding downstream 342683 28156256 ~ 28169012 (+)
G80264 NA non-coding upstream 14118 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 521552 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 607207 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 731904 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 893569 26916541 ~ 26916839 (+)
G80331 naa35 non-coding downstream 122593 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 207901 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 392748 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 911434 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 957654 28771227 ~ 28775463 (+)
G80249 NA other upstream 253401 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1407388 26380467 ~ 26403020 (+)
G80014 NA other upstream 1784105 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1813994 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2972856 24833071 ~ 24837552 (+)
AMCG00010393 isca1,LOC107662049 other downstream 55866 27869439 ~ 27874931 (+)
G80326 NA other downstream 92924 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 429416 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1680990 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2952764 30766337 ~ 30817603 (+)

Expression


Co-expression Network