AMCG00010385 (lpar1,LOC106568607,LOC107554848,LOC106572527)


Basic Information

Item Value
gene id AMCG00010385
gene name lpar1,LOC106568607,LOC107554848,LOC106572527
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27710613 ~ 27723371 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010385
ATGTTGGCAAACTTACTAGTCATGGTGGCCATCTATGTAAACCGCCGATTCCACTTTCCTATTTATTATCTTATGGCCAACCTTGCAGCAGCAGACTTCTTCGCCGGGCTGGCCTACTTTTACTTGATGTTCAACACAGGTCCTAACACCCGGAGGTTGACTGTTAGCACCTGGCTCCTGCGGCAGGGCCTTATTGACACCAGTTTGACGGCCTCTGTAGCCAACCTGTTGGCGATTGCCATAGAGCGCCACATTACTGTGTTCCGCATGCAGCTTCACACGCGAATGAGCAACCGAAGAGTAGTTGTGGTGATTGTAATCATCTGGACCATGTCCATTGTCATGGGCGCCATCCCCAGTGTGGGCTGGAACTGCATTTGTCATATCACTACCTGCTCCAACATGGCACCACTCTACAGCAACTCTTACCTGGTCTTCTGGGCTATCTTCAATCTGGTCACGTTTGCGGTCATGGTTTTCCTCTACGCCCACATCTTTGTCTATGTGCGCCAGAGGACCATGAGGATGTCCCGCCATAGCTCTGGGCCACGGCGAAACAGAGACACCATGATGAGCCTTTTGAAGACTGTGGTGATTGTTCTGGGTGCCTTCATCATTTGCTGGACCCCAGGTCTggttctgctgctgctggatgTGTTCTGTGCCAACTGCAACGTGTTGGATTTCGAGAAGTTCTTCCTCCTCCTGGCCGAGTTCAACTCCGCCATGAACCCCATTATCTATTCCTACCGAGACAAGGAGATGAGCGCCACCTTCAAACAGATCCTTTGCTGCCAGCGCCAGGAGAACGTCAATGGCACGGCGGAGGGCTCGGACCGCTCGGCCTCTTCGGTCAACCACACGATTCTGAGTGGGGCCCACAACAATGACCACTCTGTCGTGTGA

Function

symbol description
lpar1 Enables lysophosphatidic acid receptor activity. Acts upstream of or within cartilage development; hemangioblast cell differentiation; and vasculature development. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human LPAR1 (lysophosphatidic acid receptor 1).

NR:

description
lysophosphatidic acid receptor 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG:

id description
K04289 LPAR1, EDG2; lysophosphatidic acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010385 True 906 mRNA 0.53 2 27710613 27723371

Neighbor

gene id symbol gene type direction distance location
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding upstream 162605 27525520 ~ 27548008 (+)
AMCG00010381 NA coding upstream 200780 27508855 ~ 27509833 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding upstream 243991 27461042 ~ 27466622 (+)
AMCG00010380 NA coding upstream 432860 27264785 ~ 27277753 (+)
AMCG00010378 NA coding upstream 788738 26917897 ~ 26921875 (+)
AMCG00010383 NA coding downstream 40209 27763580 ~ 27775353 (+)
AMCG00010390 NA coding downstream 63066 27786437 ~ 27795327 (+)
AMCG00010384 NA coding downstream 87037 27810408 ~ 27813573 (+)
AMCG00010395 NA coding downstream 128191 27851562 ~ 27867176 (+)
AMCG00010396 NA coding downstream 169239 27892610 ~ 27898498 (+)
G80235 NA non-coding upstream 421757 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 507412 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 632109 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 793774 26916541 ~ 26916839 (+)
G80207 NA non-coding upstream 794478 26915734 ~ 26916135 (+)
G80264 NA non-coding downstream 72139 27795510 ~ 27796290 (+)
G80331 naa35 non-coding downstream 212795 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 298103 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 482950 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 1001636 28725007 ~ 28725281 (+)
G80249 NA other upstream 153606 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1307593 26380467 ~ 26403020 (+)
G80014 NA other upstream 1684310 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1714199 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2873061 24833071 ~ 24837552 (+)
AMCG00010393 isca1,LOC107662049 other downstream 146068 27869439 ~ 27874931 (+)
G80326 NA other downstream 183126 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 519618 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1771192 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 3042966 30766337 ~ 30817603 (+)

Expression


Co-expression Network